Gene detail information of Glyur008277s00044033 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75380.3 | 2.00E-88 | bifunctional nuclease in basal defense response 1 |
| NR | AFK35974.1 | 1.55E-134 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9FWS6|BBD1_ARATH | 9.00E-110 | Bifunctional nuclease 1 |
| trEMBL | tr|I3S6T2|I3S6T2_MEDTR | 6.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:AFK35974.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08277 | 25 | 2777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008277s00044033.1 | PF02577.9 | DNase-RNase | 88 | 120 | 3.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.414 |
| SRR1783600 | control | 20.005 |
| SRR1783602 | moderate drought stress | 24.788 |
| SRR1811619 | moderate drought stress | 24.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.550 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.030 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.473 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.737 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.400 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.209 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 218.329 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 218.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.567 |
| SRR2868004 | Drought Stress (root) | 25.278 |
| SRR2967015 | Control (root) | 47.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 62.013 |
| SRR9715740 | Leaf | 114.357 |
| SRR9715741 | Leaf | 68.701 |
| SRR9715739 | Root | 5.565 |
| SRR9715742 | Root | 6.516 |
| SRR9715743 | Root | 6.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.519 |
| SRR8749028 | MeJA induced 9h | 23.955 |
| SRR8749029 | MeJA induced 9h | 27.122 |
| SRR8749030 | Uninduced | 20.915 |
| SRR8749031 | Uninduced | 135.570 |
| SRR8749032 | Uninduced | 80.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.490 |
| SRR8400027 | Control - Root | 19.122 |