Gene detail information of Glyur008262s00043819 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20870.1 | 5.00E-81 | ZIP metal ion transporter family |
| NR | XP_004507104.1 | 3.50E-134 | PREDICTED: zinc transporter ZTP29-like isoform X2 [Cicer arietinum] |
| COG | YP_002508495.1 | 5.00E-38 | zinc/iron permease [Halothermothrix orenii H 168] |
| Swissprot | tr|Q940Q3|ZTP29_ARATH | 1.00E-110 | Zinc transporter ZTP29 |
| trEMBL | tr|K7LPJ7|K7LPJ7_SOYBN | 1.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14090.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08262 | 22 | 2421 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008262s00043819.1 | PF02535.17 | Zip | 81 | 173 | 8.50E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.591 |
| SRR1783600 | control | 1.455 |
| SRR1783602 | moderate drought stress | 1.186 |
| SRR1811619 | moderate drought stress | 1.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.122 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.192 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.136 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.893 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.410 |
| SRR2868004 | Drought Stress (root) | 5.719 |
| SRR2967015 | Control (root) | 5.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.037 |
| SRR9715740 | Leaf | 0.275 |
| SRR9715741 | Leaf | 0.862 |
| SRR9715739 | Root | 0.421 |
| SRR9715742 | Root | 2.143 |
| SRR9715743 | Root | 1.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.585 |
| SRR8400027 | Control - Root | 2.343 |