Gene detail information of Glyur008246s00046524 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05620.1 | 2.00E-26 | uridine-ribohydrolase 2 |
| NR | XP_003589800.1 | 6.62E-38 | Pyrimidine-specific ribonucleoside hydrolase rihA [Medicago truncatula] |
| COG | YP_004119322.1 | 7.00E-16 | inosine/uridine-preferring nucleoside hydrolase [Pantoea sp. At-9b] |
| Swissprot | tr|Q8LAC4|URH2_ARATH | 2.00E-31 | Probable uridine nucleosidase 2 |
| trEMBL | tr|B7FJZ5|B7FJZ5_MEDTR | 4.00E-38 | Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:AES60051.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08246 | 394 | 948 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008246s00046524.1 | PF01156.14 | IU_nuc_hydro | 7 | 81 | 7.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.458 |
| SRR1783600 | control | 1.495 |
| SRR1783602 | moderate drought stress | 1.402 |
| SRR1811619 | moderate drought stress | 2.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.462 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.800 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.647 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.252 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.250 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.167 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.055 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.012 |
| SRR8400027 | Control - Root | 0.000 |