Gene detail information of Glyur008221s00043932 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77360.1 | 1.00E-10 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KEH34676.1 | 1.73E-56 | PPR containing plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9FVX2|PP129_ARATH | 1.00E-11 | Pentatricopeptide repeat-containing protein At1g77360, mitochondrial (Precursor) |
| trEMBL | tr|A0A072UZ04|A0A072UZ04_MEDTR | 6.00E-57 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH34676.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08221 | 2381 | 2851 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.721 |
| SRR1783600 | control | 15.439 |
| SRR1783602 | moderate drought stress | 18.939 |
| SRR1811619 | moderate drought stress | 19.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.620 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.420 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.444 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.935 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.867 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.975 |
| SRR2868004 | Drought Stress (root) | 5.811 |
| SRR2967015 | Control (root) | 5.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.322 |
| SRR9715740 | Leaf | 2.450 |
| SRR9715741 | Leaf | 1.718 |
| SRR9715739 | Root | 5.899 |
| SRR9715742 | Root | 4.213 |
| SRR9715743 | Root | 4.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.635 |
| SRR8749028 | MeJA induced 9h | 6.418 |
| SRR8749029 | MeJA induced 9h | 1.687 |
| SRR8749030 | Uninduced | 0.542 |
| SRR8749031 | Uninduced | 0.243 |
| SRR8749032 | Uninduced | 0.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.915 |
| SRR8400027 | Control - Root | 6.701 |