Gene detail information of Glyur008140s00047933 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26490.1 | 5.00E-54 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_007142456.1 | 6.04E-116 | hypothetical protein PHAVU_008G282100g [Phaseolus vulgaris] |
| trEMBL | tr|V7BA29|V7BA29_PHAVU | 2.00E-116 | Uncharacterized protein {ECO:0000313|EMBL:ESW14450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08140 | 1579 | 2283 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008140s00047933.1 | PF03168.8 | LEA_2 | 116 | 208 | 2.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.393 |
| SRR1783600 | control | 4.238 |
| SRR1783602 | moderate drought stress | 3.548 |
| SRR1811619 | moderate drought stress | 3.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.279 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.537 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.945 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.072 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.930 |
| SRR2868004 | Drought Stress (root) | 2.670 |
| SRR2967015 | Control (root) | 3.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.612 |
| SRR9715740 | Leaf | 0.090 |
| SRR9715741 | Leaf | 0.596 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.386 |
| SRR9715743 | Root | 2.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.216 |
| SRR8749028 | MeJA induced 9h | 0.048 |
| SRR8749029 | MeJA induced 9h | 0.097 |
| SRR8749030 | Uninduced | 0.023 |
| SRR8749031 | Uninduced | 0.043 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.589 |
| SRR8400027 | Control - Root | 2.815 |