Gene detail

Gene detail information of Glyur008090s00046916

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25590.1	6.00E-65	actin depolymerizing factor 7
NR	XP_004503768.1	4.40E-91	PREDICTED: actin-depolymerizing factor 7-like [Cicer arietinum]
Swissprot	tr\|Q67ZM4\|ADF7_ARATH	2.00E-82	Actin-depolymerizing factor 7
trEMBL	tr\|G7LI12\|G7LI12_MEDTR	2.00E-90	Cofilin/actin-depolymerizing factor-like protein {ECO:0000313\|EMBL:AET05009.2}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08090	952	1913	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030042 actin filament depolymerization

cellular_component

GO:0005622 intracellular

GO:0015629 actin cytoskeleton

molecular_function
GO:0003779 actin binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008090s00046916.1	PF00241.15	Cofilin_ADF	14	136	5.30E-46

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.334
SRR1783600	control	1.351
SRR1783602	moderate drought stress	0.998
SRR1811619	moderate drought stress	0.918

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.179
DRR006520	Root Summer glycyrrhizin high producing strain	0.255
DRR006521	Root Winter glycyrrhizin high producing strain	2.856
DRR006522	Root Winter glycyrrhizin high producing strain	2.868
DRR006523	Root Summer glycyrrhizin low producing strain	0.118
DRR006524	Root Summer glycyrrhizin low producing strain	0.132
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.858
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.678

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.939
SRR2868004	Drought Stress (root)	2.111
SRR2967015	Control (root)	2.231

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.809
SRR9715740	Leaf	1.319
SRR9715741	Leaf	1.355
SRR9715739	Root	0.000
SRR9715742	Root	0.137
SRR9715743	Root	0.019

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.767
SRR8749028	MeJA induced 9h	0.480
SRR8749029	MeJA induced 9h	0.382
SRR8749030	Uninduced	1.212
SRR8749031	Uninduced	0.708
SRR8749032	Uninduced	0.677

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.900
SRR8400027	Control - Root	0.862