Gene detail

Gene detail information of Glyur008085s00046202.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35650.1	4.00E-32	isocitrate dehydrogenase III
NR	KHN09360.1	7.30E-41	Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [Glycine soja]
COG	YP_008088736.1	4.00E-15	isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
Swissprot	tr\|O81796\|IDH3_ARATH	2.00E-38	Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (Precursor)
trEMBL	tr\|I1JCB1\|I1JCB1_SOYBN	4.00E-41	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G04780.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08085	2740	3062	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00030	IDH3	EC:1.1.1.41	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Citrate cycle (TCA cycle)	map00020

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0000287 magnesium ion binding

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008085s00046202.1	PF00180.15	Iso_dh	8	71	5.60E-14

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	10.146
SRR1783600	control	10.297
SRR1783602	moderate drought stress	6.860
SRR1811619	moderate drought stress	7.369

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.837
DRR006520	Root Summer glycyrrhizin high producing strain	10.591
DRR006521	Root Winter glycyrrhizin high producing strain	8.932
DRR006522	Root Winter glycyrrhizin high producing strain	6.685
DRR006523	Root Summer glycyrrhizin low producing strain	0.179
DRR006524	Root Summer glycyrrhizin low producing strain	0.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.352
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.192

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.120
SRR2868004	Drought Stress (root)	3.600
SRR2967015	Control (root)	2.845

SRA Experiment	Description	TPM
SRR9715738	Leaf	69.799
SRR9715740	Leaf	57.815
SRR9715741	Leaf	80.280
SRR9715739	Root	19.059
SRR9715742	Root	28.750
SRR9715743	Root	24.075

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.625
SRR8749028	MeJA induced 9h	20.931
SRR8749029	MeJA induced 9h	35.549
SRR8749030	Uninduced	28.820
SRR8749031	Uninduced	24.282
SRR8749032	Uninduced	23.229

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.087
SRR8400027	Control - Root	46.495