Gene detail

Gene detail information of Glyur008057s00045320

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	3.00E-125	senescence-related gene 1
NR	XP_004488976.1	0	PREDICTED: protein SRG1-like [Cicer arietinum]
COG	YP_003209425.1	2.00E-33	hypothetical protein CTU_10620 [Cronobacter turicensis z3032]
Swissprot	tr\|Q39224\|SRG1_ARATH	2.00E-159	Protein SRG1
trEMBL	tr\|A0A072V8Z9\|A0A072V8Z9_MEDTR	0	2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313\|EMBL:KEH38519.1}

Sequence

Transcript Sequence

>Glyur008057s00045320.1
AACCAAGGATGGAGACACAAACCATGGAAGAGGTCAACAATCCATCTGGGAGTTCTCTTTTGGTACCATCAGTTCAAGAGTTGGCTAAGGAGAGTTCTACCGTTCCACCCAGATACATCCAGCCTCAACATGAAGACTTGGTCATCTATGAAGCTGATAGTATCCTTGAGATTCCAGTTATTGATATGCAGAGCTTGCTTTCTGTAGAATCTGGGAGTTCAGAATTGGCTAAGCTTCGCCTTGCTTGCAAAGATTGGGGATTCTTCCAGCTTGTAAATCATGGCGTTAGTTCTTCCTTGCTGGAGAAAGTAAAGTTGGAGATTCAGGATTTCTTCAACCTTCCAATGTCAGAGAAGAAAAAGTTTTGGCAGAGTCCACAACATATTGAGGGATTTGGACAGGCATTTGTTTTAAGTGAAGACCAGAAACTTGATTGGGCTGATATGTTCTATATGACCACACTTCCAACACACTTGAGAATGCCCCACTTATTTCCACAACTCCCTCTTCCTATCAGAGACACTGTAGAGCTATACTCTCAGGAACTGAAAAGGCTAGCTATGGTTATTCTTGGACATATGGCAAAAGCTCTGAAAATGGAAGAGACAGAAATGAGAGAGTTATTTGAAGATGGGATGCAGTCAATGAGGATGAACTATTACCCTCCATGTCCACAACCAGAGAAGGTTATTGGCCTCACTCCCCATTCAGATGGAACAGGACTCACCATCCTCCTACAAGTGAATGAGGTGGAAGGGCTCCAAGTGAGGAAAGATGGCATGTGGGTTCCCGTTAAACCCCTGCCTAATGCCTTCATTGTCAACATTGGGGATATCCTCGAGATTGTAACTAATGGGATATACCGAAGTATTGAGCATCGCGCAACGGTGAACTCTGAAAAAGAAAGGCTTTCAATTGCAACATTCTATACAGCAAGACATGATGGAGAGATAGCACGGTTCAAGAGAATTACACTAAAGGAATTCTTGAGGAATATGTTTGCTCACAAACTTGACGGAAAGTCTTGTGTAGATGCCATGAGAATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08057	1070	3104	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008057s00045320.1	PF14226.1	DIOX_N	55	163	3.40E-28
Glyur008057s00045320.1	PF03171.15	2OG-FeII_Oxy	211	308	1.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.889
SRR1783600	control	8.966
SRR1783602	moderate drought stress	11.185
SRR1811619	moderate drought stress	10.955

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.941
DRR006520	Root Summer glycyrrhizin high producing strain	7.194
DRR006521	Root Winter glycyrrhizin high producing strain	6.053
DRR006522	Root Winter glycyrrhizin high producing strain	5.996
DRR006523	Root Summer glycyrrhizin low producing strain	3.299
DRR006524	Root Summer glycyrrhizin low producing strain	3.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.881

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.203
SRR2868004	Drought Stress (root)	3.712
SRR2967015	Control (root)	3.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.187
SRR9715740	Leaf	22.627
SRR9715741	Leaf	19.331
SRR9715739	Root	2.583
SRR9715742	Root	7.804
SRR9715743	Root	6.238

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.706
SRR8749028	MeJA induced 9h	5.094
SRR8749029	MeJA induced 9h	6.160
SRR8749030	Uninduced	8.607
SRR8749031	Uninduced	8.895
SRR8749032	Uninduced	6.893

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.765
SRR8400027	Control - Root	12.894