Gene detail

Gene detail information of Glyur008051s00046182

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53130.1	5.00E-115	cyclic nucleotide gated channel 1
NR	XP_004494973.1	3.68E-174	PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cicer arietinum]
COG	YP_006439308.1	4.00E-16	putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
Swissprot	tr\|O65717\|CNGC1_ARATH	4.00E-140	Cyclic nucleotide-gated ion channel 1
trEMBL	tr\|A0A072UFR6\|A0A072UFR6_MEDTR	4.00E-171	Cyclic nucleotide-gated ion channel-like protein {ECO:0000313\|EMBL:KEH24625.1}

Sequence

Transcript Sequence

>Glyur008051s00046182.1
GAATATCAGAAATGTATAACTACCAGGTGGGAAGAGATGAGACTGAAGATGCAGGATGAAGAACAGTGGATGTCCTACCGTATGCTACCTGANAGCTTGAGGCAGAGAGTTAGAAGGTATGAACATTACAAATGGGAAGAATGTCGAGGTATTGAGGAGGAGTCATTGTTACGTAGCCTCCCGAAAGATCTCAGAAAGGACATAAAGCGTCATCTTTGCTTGGCTTTAGTTAGAAAAGTGCCAATGTTTGAGAAAATGGATAAACGATTGTTGGATGCAATGTGTGATAGATTGAAGCCGATCCTGTATACCGAGAAGAGCTGCATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTGCTTCCATGACAACAGATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTGCTCATGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAAATCCTCCTCCTCAAGCCTACCCATTTCAACTAGAACAGTGGAAACTATATCAGAGGTTGAAGCCTTTGCTCTCATGCCCGGTGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTATAAACCACACACAGCTCCAACACACTTTCAGGTTCTATGCCCCACAATGGAAGACATGGGCTGCTTGTTTCATACAAGCATCTTGGCNTCGATACCGGAAGAAGAAGATTGAGAGGTCATTACATGAAGCAGAAGACAAGCTACAAGATGCTTTGGCAAATCAGGATGGGTCCACTATAAGCCTTGGCGCAACCATATATGCATCAAGGTTTGCTGCAAATGCATTACGAACATTGAGAGAAAATAACAGACACAGCAGGATGCCGCAAACACTACCACTTCGGTTACCTCCAAAATCCAAACCAGCTGAGCCTGATTTCACTGCTCAGAATCACTAGGGGTGAAGTTGTTTTAAGCAAGTTTGGATTTTAGAATAGGATCATGGTTAACATATCCATACTCCATTTTATATTCATGTTGAAGGGGGAGTAGCTGAAGAATAAAACACCTGACTGCATATTTCCAGAAAAGTGGCCTTATTTATAGCACGATTTTCTATCCTTAAACAAATGGGGCAACATTTGAGTTTTAATTGGATCCTAACAAAANACAAAACAAGATCAACAAATTGAACTCAATCCTACTGTTCCGAATCATGACACAAATCAGTTGAACCCAGATGCACTTTCAAATCCACTTTATTGAAGGACTACATTGCAAATAAATAGAATATTGGCCAACTGGTTGTCGGTAAACAATATCAGCCGTCAATACACATTAACACTCACTCAATCCAATGGTACGCAGCAGTGCTATATCGGTGCAGCACCCGCTTTGCTGGGTCATGCTAGTCTTCACCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold08051	300	2130	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur008051s00046182.1	PF00027.24	cNMP_binding	103	196	3.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.165
SRR1783600	control	4.818
SRR1783602	moderate drought stress	4.866
SRR1811619	moderate drought stress	4.302

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.857
DRR006520	Root Summer glycyrrhizin high producing strain	7.111
DRR006521	Root Winter glycyrrhizin high producing strain	2.407
DRR006522	Root Winter glycyrrhizin high producing strain	2.576
DRR006523	Root Summer glycyrrhizin low producing strain	34.344
DRR006524	Root Summer glycyrrhizin low producing strain	34.707
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.658
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.381

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.756
SRR2868004	Drought Stress (root)	10.408
SRR2967015	Control (root)	9.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.992
SRR9715740	Leaf	13.382
SRR9715741	Leaf	11.612
SRR9715739	Root	19.330
SRR9715742	Root	40.464
SRR9715743	Root	35.291

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.555
SRR8400027	Control - Root	29.845