Gene detail information of Glyur008048s00046220 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39705.1 | 3.00E-19 | ROTUNDIFOLIA like 8 |
| NR | KDP44933.1 | 1.12E-37 | hypothetical protein JCGZ_01433 [Jatropha curcas] |
| trEMBL | tr|A0A067LCG0|A0A067LCG0_JATCU | 4.00E-38 | Uncharacterized protein {ECO:0000313|EMBL:KDP44933.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08048 | 2239 | 2645 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008048s00046220.1 | PF08137.7 | DVL | 72 | 90 | 1.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.578 |
| SRR1783600 | control | 15.844 |
| SRR1783602 | moderate drought stress | 31.190 |
| SRR1811619 | moderate drought stress | 30.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.201 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.269 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 112.994 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 114.110 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.952 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.138 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.074 |
| SRR2868004 | Drought Stress (root) | 17.368 |
| SRR2967015 | Control (root) | 13.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.438 |
| SRR9715740 | Leaf | 7.750 |
| SRR9715741 | Leaf | 9.612 |
| SRR9715739 | Root | 4.404 |
| SRR9715742 | Root | 7.512 |
| SRR9715743 | Root | 4.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.887 |
| SRR8749028 | MeJA induced 9h | 17.753 |
| SRR8749029 | MeJA induced 9h | 11.780 |
| SRR8749030 | Uninduced | 2.806 |
| SRR8749031 | Uninduced | 5.673 |
| SRR8749032 | Uninduced | 5.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.488 |
| SRR8400027 | Control - Root | 10.747 |