Gene detail information of Glyur008044s00047316 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27280.1 | 1.00E-38 | Calcium-binding EF-hand family protein |
| NR | AFK34200.1 | 1.46E-66 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LSQ6|PBP1_ARATH | 1.00E-43 | Calcium-binding protein PBP1 |
| trEMBL | tr|I3S1Q8|I3S1Q8_LOTJA | 5.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:AFK34200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08044 | 1582 | 1935 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008044s00047316.1 | PF13833.1 | EF-hand_8 | 43 | 96 | 2.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.304 |
| SRR1783600 | control | 4.282 |
| SRR1783602 | moderate drought stress | 2.795 |
| SRR1811619 | moderate drought stress | 3.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.280 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 113.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 112.939 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 117.304 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 117.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.940 |
| SRR2868004 | Drought Stress (root) | 71.764 |
| SRR2967015 | Control (root) | 74.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 734.489 |
| SRR9715740 | Leaf | 890.320 |
| SRR9715741 | Leaf | 599.712 |
| SRR9715739 | Root | 254.495 |
| SRR9715742 | Root | 190.410 |
| SRR9715743 | Root | 181.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 90.984 |
| SRR8749028 | MeJA induced 9h | 77.505 |
| SRR8749029 | MeJA induced 9h | 90.388 |
| SRR8749030 | Uninduced | 24.040 |
| SRR8749031 | Uninduced | 3.452 |
| SRR8749032 | Uninduced | 28.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.504 |
| SRR8400027 | Control - Root | 184.954 |