Gene detail information of Glyur008028s00045642 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09610.1 | 2.00E-58 | Protein of unknown function (DUF579) |
| NR | XP_007148579.1 | 1.25E-74 | hypothetical protein PHAVU_006G220400g [Phaseolus vulgaris] |
| Swissprot | tr|Q6NMK1|GXM1_ARATH | 2.00E-71 | Glucuronoxylan 4-O-methyltransferase 1 |
| trEMBL | tr|V7BU70|V7BU70_PHAVU | 5.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:ESW20573.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08028 | 2372 | 2992 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008028s00045642.1 | PF04669.8 | Polysacc_synt_4 | 18 | 182 | 1.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.331 |
| SRR1783600 | control | 0.550 |
| SRR1783602 | moderate drought stress | 2.937 |
| SRR1811619 | moderate drought stress | 2.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.963 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.431 |
| SRR2868004 | Drought Stress (root) | 1.277 |
| SRR2967015 | Control (root) | 1.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.042 |
| SRR9715740 | Leaf | 1.920 |
| SRR9715741 | Leaf | 0.462 |
| SRR9715739 | Root | 2.055 |
| SRR9715742 | Root | 6.401 |
| SRR9715743 | Root | 4.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.110 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.220 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.963 |
| SRR8400027 | Control - Root | 5.012 |