Gene detail information of Glyur008009s00047709 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45550.1 | 6.00E-68 | cytochrome P450, family 76, subfamily C, polypeptide 4 |
| NR | ABD97100.1 | 2.17E-118 | cytochrome P450 monooxygenase CYP76X3 [Medicago truncatula] |
| COG | YP_007058923.1 | 3.00E-29 | cytochrome P450 [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q8VWZ7|C76B6_CATRO | 1.00E-85 | Geraniol 8-hydroxylase |
| trEMBL | tr|Q1WCN9|Q1WCN9_MEDTR | 8.00E-119 | Cytochrome P450 monooxygenase CYP76X3 {ECO:0000313|EMBL:ABD97100.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold08009 | 412 | 1032 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP76C4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur008009s00047709.1 | PF00067.17 | p450 | 1 | 184 | 3.90E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.142 |
| SRR1783600 | control | 0.136 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.615 |
| SRR2868004 | Drought Stress (root) | 44.245 |
| SRR2967015 | Control (root) | 16.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.110 |
| SRR9715743 | Root | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.087 |
| SRR8749028 | MeJA induced 9h | 2.371 |
| SRR8749029 | MeJA induced 9h | 2.737 |
| SRR8749030 | Uninduced | 28.494 |
| SRR8749031 | Uninduced | 48.429 |
| SRR8749032 | Uninduced | 16.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.348 |
| SRR8400027 | Control - Root | 4.694 |