Gene detail

Gene detail information of Glyur007988s00046670

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41370.1	1.00E-111	Ankyrin repeat family protein / BTB/POZ domain-containing protein
NR	XP_008443289.1	8.68E-168	PREDICTED: regulatory protein NPR5 [Cucumis melo]
COG	YP_001958079.1	2.00E-07	hypothetical protein Aasi_0996 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9ZVC2\|NPR5_ARATH	1.00E-151	Regulatory protein NPR5
trEMBL	tr\|A0A0A0LBT2\|A0A0A0LBT2_CUCSA	8.00E-168	Uncharacterized protein {ECO:0000313\|EMBL:KGN59470.1}

Sequence

Transcript Sequence

>Glyur007988s00046670.1
CAAATTTTTTTTCCTTCATGACACACACAGAAGCAACTGGCGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCCTCAAGGAAGCAAGAGATGCACCAGCTCTGGACAACTTGCTCCCATTTGGTAGCCAAATCAGGCCTCCCCCCAGAAATCCTCGCCAAACACCTCCCAATAGACGTGGTGGCCAAAATTGAAGAGCTCCGTCTCAAATCCTCCCTCTCACGCCGCTCCGGCCTAATCCCACTCCACCACCACGACGTCCACCACCAACTGGAGGACCAGAAAATCCGTCGAATGAGGCGGGCACTCGACTCCTCCGANGTCGAGCTTGTCAAGCTCATGGTCATGGGAGAAGGCCTAAACCTCGACGAGGCATTGGCATTGCACTACGCTGTTGAGAATTGCAGCCGGGAGGTAGTTAAGGCCTTGCTTGAGCTCGGCGCCGCCGATGTTAACTACCCGGTGGGCCCCAACGGGAGGACGCCGCTTCACCTCGCCGCGGAGATGGTGTCGCCGGAGATGGTTGCGGTCTTGCTCGACCACCACGCCGACCCGAATGTCCGAACCGTCGATGGCGTCACGCCTTTGGACATCCTCAGAACCCTAACCTCTGATTTCCTCTTCAAAGGTGCTGTCCCNGGACTCACCCACATTGAACCAAACAAGCTCAGGTTGTGTTTGGAACTCGTTCAATCCGCGGCTCTCGTTCTGTCTCGTGAAGAAGCCAATGCTAACAATAACAATAATAATAACCCTTCTTCTTCAGCACTACCTATATACCCACCAATGAGTGAAGACCANAGTAGCAGTAGCAGTGGAAACAACAACAACAACAACATTGGTAATCTTAATTTGGATTCTAGGTTGGTGTACCTCAACCTTGGTGCTGCTCATCAAATGGGTGCTAGTGGTGATGATGACCATGGAAGCCACAATAACCGTCATGGGTCATCACAAGGTGGTGGTGGATGTGAACCAACAATGTATCATCATCATCATCATCATTCTCATGACCATTTCTAATTAAGCCTAGCTATATATATAGTAGCTATTTTTTATTATATGTCACATTAGCTAGCTAGCTACATTATATTAATTATATATAGCTAGGTAGGTCAAGATCATTTTCGAGTACATGAATTGCTGCTGCTGATTTTAATTTGGATATTATTACTATGGATGATGATGATGATGATGGAAAAAATGATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGTTGAAGCAGGTTCATGGAAGAAAATGGACAAGAGAGAAAGGACATATGGGACATATGAACAACACTGTTGGATGGGGATGGAGCATAGAAAATTTTCTTCTTTTTTGTCAGTTGAAGTTAATAGCTAGTACTAGTAGTGTTCATCAAGTCTTCTCACTACATTACACTGTTCTTTTGTTTTTTTGTTTTTGGCTATGTTGGTTTTTTAATTTTTATTTTGTAGGGCTTTTTAAATGGTCACCATTTGAAATTGAAGTGCGGTTTCATAGGAGGTGATGAGGATATATAAGCGACAAGGAGAATCTAATCAGTTTATTTCTTTTTTTTTTGTTTGGCTGTAAAATGAAAGGGTGCATGGAGGAGACTCAGGTCAATCTTTTCAAACCCATTTCACCTGTCAACTCTCCTTTTTTTATTTTTGTATTTACTGATGATGTTAACTTAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07988	393	2354	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007988s00046670.1	PF11900.3	DUF3420	37	91	8.60E-14
Glyur007988s00046670.1	PF12796.2	Ank_2	94	179	6.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.034
SRR1783600	control	2.152
SRR1783602	moderate drought stress	5.017
SRR1811619	moderate drought stress	4.917

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.905
DRR006520	Root Summer glycyrrhizin high producing strain	11.017
DRR006521	Root Winter glycyrrhizin high producing strain	0.938
DRR006522	Root Winter glycyrrhizin high producing strain	1.017
DRR006523	Root Summer glycyrrhizin low producing strain	6.841
DRR006524	Root Summer glycyrrhizin low producing strain	6.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.189

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.351
SRR2868004	Drought Stress (root)	1.925
SRR2967015	Control (root)	1.462

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.078
SRR9715740	Leaf	0.071
SRR9715741	Leaf	0.000
SRR9715739	Root	1.412
SRR9715742	Root	3.765
SRR9715743	Root	3.370

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.291
SRR8749028	MeJA induced 9h	2.950
SRR8749029	MeJA induced 9h	2.149
SRR8749030	Uninduced	0.056
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.050

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.204
SRR8400027	Control - Root	6.042