Gene detail information of Glyur007910s00046978 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35830.1 | 2.00E-25 | Ankyrin repeat family protein |
| NR | KHN47692.1 | 9.47E-64 | hypothetical protein glysoja_026381 [Glycine soja] |
| COG | YP_003573178.1 | 6.00E-07 | hypothetical protein Aasi_1784 [Candidatus Amoebophilus asiaticus 5a2] |
| trEMBL | tr|A0A072VH05|A0A072VH05_MEDTR | 3.00E-63 | Ankyrin repeat plant-like protein {ECO:0000313|EMBL:KEH37410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07910 | 1803 | 3235 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007910s00046978.1 | PF12796.2 | Ank_2 | 44 | 137 | 1.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.871 |
| SRR1783600 | control | 2.894 |
| SRR1783602 | moderate drought stress | 1.303 |
| SRR1811619 | moderate drought stress | 0.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.311 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.561 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.334 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.684 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.282 |
| SRR2868004 | Drought Stress (root) | 1.445 |
| SRR2967015 | Control (root) | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.637 |
| SRR9715740 | Leaf | 3.481 |
| SRR9715741 | Leaf | 4.210 |
| SRR9715739 | Root | 1.298 |
| SRR9715742 | Root | 5.870 |
| SRR9715743 | Root | 5.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.523 |
| SRR8400027 | Control - Root | 0.712 |