Gene detail information of Glyur007906s00045877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11650.1 | 2.00E-41 | osmotin 34 |
| NR | KEH21028.1 | 6.79E-94 | pathogenesis-related thaumatin family protein [Medicago truncatula] |
| Swissprot | tr|P31110|TLP_ORYSJ | 4.00E-65 | Thaumatin-like protein (Precursor) |
| trEMBL | tr|A0A072TVX9|A0A072TVX9_MEDTR | 3.00E-94 | Pathogenesis-related thaumatin family protein {ECO:0000313|EMBL:KEH21028.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07906 | 2099 | 2632 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007906s00045877.1 | PF00314.12 | Thaumatin | 28 | 145 | 5.10E-44 |
| Glyur007906s00045877.1 | PF00314.12 | Thaumatin | 146 | 177 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.774 |
| SRR1783600 | control | 0.735 |
| SRR1783602 | moderate drought stress | 1.873 |
| SRR1811619 | moderate drought stress | 2.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 165.032 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 160.916 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.104 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 190.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 190.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.435 |
| SRR2868004 | Drought Stress (root) | 8.538 |
| SRR2967015 | Control (root) | 8.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 903.563 |
| SRR9715740 | Leaf | 494.590 |
| SRR9715741 | Leaf | 1021.812 |
| SRR9715739 | Root | 35.551 |
| SRR9715742 | Root | 22.607 |
| SRR9715743 | Root | 21.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 111.650 |
| SRR8749028 | MeJA induced 9h | 73.919 |
| SRR8749029 | MeJA induced 9h | 82.849 |
| SRR8749030 | Uninduced | 34.374 |
| SRR8749031 | Uninduced | 33.030 |
| SRR8749032 | Uninduced | 87.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.288 |
| SRR8400027 | Control - Root | 3.858 |