Gene detail

Gene detail information of Glyur007899s00047674.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68530.1	5.00E-128	3-ketoacyl-CoA synthase 6
NR	XP_006589575.1	0	PREDICTED: 3-ketoacyl-CoA synthase 6-like [Glycine max]
COG	YP_001833684.1	5.00E-08	3-oxoacyl-ACP synthase [Beijerinckia indica subsp. indica ATCC 9039]
Swissprot	tr\|Q9C6L5\|KCS5_ARATH	1.00E-157	3-ketoacyl-CoA synthase 5
trEMBL	tr\|K7LL62\|K7LL62_SOYBN	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur007899s00047674.1
ATGGAAGCCATCTCCAAGCAAAACCATGTCCCTTTCTCCCATGCAAGTACCCCTGAGTACCAGTTCACCCTCTTATCAAACCATCTCCTCTCAAAACTCTCACATTTTCTATGGCTCTGTACCTTCTTGCTTGCAACATTCACAGAAGTGTTCTTACTTCTGCAAAACCAGGAACTCACAATGTTCCATTTTCTGCTCCCATGTTTTCTCCTCCTCTGTTTCCTTGTAAAACATTACTTCCTCTCAAAGCCCTCTCCTATTTACCTTGTCGACTTCTCATGTCTCAAACCACCAAGCCATTGCAGGGTGCCTTTTGCAGCATTTCTAGAAAACGTTTCCTTGCTTGAATTCTTTGACAGTGAAAGCGTGGCTTTCATGTCCAAAGTGCTCCATTCTTCAGGCCAAAGTGAAGAGACTTGTCTCCCCCCTGCACTACACTACATTCCCCCAAAGACCCATCAAACAGAATCCATCAAAGAGGTTCACATGGTTCTTTTCCCAATCATGGATGATCTTTTCACAAAAACCAATACCTCACCCTTTGATATAGACATACTCATCCTAAACTGCAGTGGCTTTTGTCCCTCCCCTTCTCTTACCTCTATTCTCATCAACAAATACTCCATGAGAAGTGACATTAAGAGCTATAATGTCTCTGGTATGGGGTGCAGTGCTAGTGCTCTCTGTATCGATTTGGCTCAGAATCTTCTCAGAGTTCACAAAAACTCCAATGCCATTGTTCTCAGCACAGAGATTCTTTCAACGGGTTGGTATTCAGGGAAAGAACGTTCCAAGTTGCTGATAAACTGTCTCTTCCGGATGGGAAGTGCAGCGATTCTTCTCTCAAACAAGAAACAAGCAAGAAAATATGCAAAATACAGGTTGATCAGAACACTNAGAACACAGAGAGCATTTGATGAAAAAGCCTATTTTTCTGCAATTAGGGAAGAGGATTCAGATGGGAAACTCGGGGTGACACTGAAGCGTGACTTGCTTCATGTAGCTGGTGAAACCCTGCGTGCAAACATCTCCATTTTGGGTTCTGAAATATTGCCCCTTTCGGAAAAGTTTTGGTATGGGGTTTCTGTGTTGAAGAAGAGGTTTATTAAGTCCGAGGGAAGAACATCATATGTGCCGAATTTCAAGACAGCGATACAGCATTTCTGTTTGCCNTGTTCGGGGAGGGCAGTGATAAGGGAAGTGGGGAAAGGGTTGAGGCTCGGGGAGAGAGATNTTGAACCTGCACTGATGACACTGCACAGGTTTGGGAACCAGTCTTCTTCTTCACTGTGGTACGAACTGGCTTACTTGGAAGCCAAGGAAAGGGTAGGGAAAGGTGACAGGGTCTGGCAACTTGGGATGGGGAGTGGGCCCAAATGTAACAGTGTTGTTTTGATGTGTATTAGGCCTTTAGTTGGAGAGTCCAACAAGGGACCATGGGCTGATTGTATCCATCAATACCCAATTTTAGCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07899	865	2340	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007899s00047674.1	PF08392.7	FAE1_CUT1_RppA	79	367	4.60E-111
Glyur007899s00047674.1	PF08541.5	ACP_syn_III_C	384	465	1.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.074
SRR1783600	control	0.074
SRR1783602	moderate drought stress	0.023
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.106
SRR2868004	Drought Stress (root)	0.033
SRR2967015	Control (root)	0.035

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.041
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.011
SRR8400027	Control - Root	0.041