Gene detail information of Glyur007873s00047427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55190.1 | 2.00E-22 | PRA1 (Prenylated rab acceptor) family protein |
| NR | KEH23866.1 | 1.88E-86 | PRA1 family protein [Medicago truncatula] |
| Swissprot | tr|Q9C889|PR1F2_ARATH | 9.00E-41 | PRA1 family protein F2 |
| trEMBL | tr|A0A072U3G2|A0A072U3G2_MEDTR | 7.00E-87 | PRA1 family protein {ECO:0000313|EMBL:KEH23866.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07873 | 2194 | 2811 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007873s00047427.1 | PF03208.14 | PRA1 | 41 | 184 | 1.50E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.828 |
| SRR1783600 | control | 8.721 |
| SRR1783602 | moderate drought stress | 12.438 |
| SRR1811619 | moderate drought stress | 12.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.044 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.185 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.943 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.552 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.611 |
| SRR2868004 | Drought Stress (root) | 24.396 |
| SRR2967015 | Control (root) | 31.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.450 |
| SRR9715740 | Leaf | 20.394 |
| SRR9715741 | Leaf | 20.361 |
| SRR9715739 | Root | 113.923 |
| SRR9715742 | Root | 70.507 |
| SRR9715743 | Root | 76.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.465 |
| SRR8749028 | MeJA induced 9h | 62.564 |
| SRR8749029 | MeJA induced 9h | 73.663 |
| SRR8749030 | Uninduced | 102.634 |
| SRR8749031 | Uninduced | 50.697 |
| SRR8749032 | Uninduced | 61.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.983 |
| SRR8400027 | Control - Root | 16.355 |