Gene detail

Gene detail information of Glyur007854s00043983

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66840.1	2.00E-45	SAP domain-containing protein
NR	XP_004510536.1	0	PREDICTED: zinc finger CCCH domain-containing protein 62-like [Cicer arietinum]
Swissprot	tr\|Q338N2\|C3H62_ORYSJ	7.00E-68	Zinc finger CCCH domain-containing protein 62
trEMBL	tr\|K7MEJ2\|K7MEJ2_SOYBN	3.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G01296.1}

Sequence

Transcript Sequence

>Glyur007854s00043983.1
ATGGCGACCGAAGATTCACCATTGAAGGTGCACCAAATTANCAGCGAATCTGAAGGATCCGACCCGGATTCGGACTGGGACGATTCGGAAGGAGACCCCGATTACGACATGCTCGAAGAAACCCAAAGCAACTTCTCCAACCTCTCACTCAGTAACAAGTCAAAAAAGCAAGTTGTTAAAGATAAGGGTCTGGCTGCTGAGATAGATCCTCAAGTGCTGGAAATGAATGCACCTTCTCTTGATGATGAAAAATTTGAAATAGTTCAGAAAACAATAAAAGCGGGACTGCTAGAGAAATTGAAAGTGGATGAATGCAAGATGTATTTGAAGAAGAATGGTCTGAGGCTAACTGGAAATAAGGACACACTCATCCAGCGTATAAAGGAGCATCTAGAGATTATAAATGGTGGAGGGGAGAAGAAGTACCCGCCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTTTATGAAATGTTCAACATAGCATCCAGGNGTGCCAGTGGTCCACCTTGTGGCAAAAGGATTGTTGCAGGCCACATAGNGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTACTATGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTTTACCCGCTACTGATTAAGGGCCGAAACCTTTATAGGTCGAAGACCTTGAGACAGAAATGGGAGGATGAAGGCAAAAGGCAGAAAATGTTAATGGAAAAACACTCCAGGGGATCTGTTGCTAGGGCAGATAGGGAAGCAAGGGATGCAGCAAAGAACCAAAGTCAATCACATTCGCGCATCGCAATGTCACGACATCAACCTCAGGAAACAGATATATCCACTAATCATGGNAAGTCTGTCCATTCTAAAACCGTGGCAATGGGATCTGTTCACCATATGCATAATCAGCAAGCTTGGAAGCAGTACCGCCCTTTCATTGCTGAGACAAATGGATTTGCAGAGAGGACTTATCATGGGAAACCTTTGGCAAATGCAAATCACTTTCATCATCCATTGATGATGCCCAATGGAGAAAGCTATAAGCAAAAGCAGCTGTGTAGACACTTTTCCCGTGGGAGGTGCTATTTTTTTGGGGACAACTGCAAATTCTTACATGATTTGAGAGACAAAGGGAATGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07854	77	3246	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007854s00043983.1	PF02037.22	SAP	97	131	1.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.965
SRR1783600	control	3.857
SRR1783602	moderate drought stress	2.425
SRR1811619	moderate drought stress	2.651

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.963
DRR006520	Root Summer glycyrrhizin high producing strain	6.547
DRR006521	Root Winter glycyrrhizin high producing strain	0.469
DRR006522	Root Winter glycyrrhizin high producing strain	0.457
DRR006523	Root Summer glycyrrhizin low producing strain	1.026
DRR006524	Root Summer glycyrrhizin low producing strain	1.381
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.445
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.504

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.505
SRR2868004	Drought Stress (root)	4.358
SRR2967015	Control (root)	4.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.818
SRR9715740	Leaf	0.235
SRR9715741	Leaf	0.341
SRR9715739	Root	0.021
SRR9715742	Root	0.779
SRR9715743	Root	1.103

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.291
SRR8749028	MeJA induced 9h	9.044
SRR8749029	MeJA induced 9h	4.581
SRR8749030	Uninduced	3.134
SRR8749031	Uninduced	1.049
SRR8749032	Uninduced	1.756

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.962
SRR8400027	Control - Root	5.809