Gene detail

Gene detail information of Glyur007839s00046238.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21440.1	2.00E-76	MYB-like 102
NR	XP_006594633.1	5.78E-161	PREDICTED: protein ODORANT1 [Glycine max]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	6.00E-69	Transcription factor MYB39
trEMBL	tr\|I1M2D6\|I1M2D6_SOYBN	2.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G32090.1}

Sequence

Transcript Sequence

>Glyur007839s00046238.1
ACAAAATTGAAGTCCATTATTTCTCCCCCCATTTCCCTCTCTCTCTTTCTCTATTCTCTCACGTCTCCAAAACTTCTTCTTTTTTTCTGTCATATTCCGCTAGCTTCACGCAAACTCATTGACCATAGTAGCTTAATTAGCTCAACTATNGTTCAGAGCTTTAGCTAGCACAGTAGAGCCATATGGGAAGAGCACCTTGCTGTGAGAAGAATGGCCTCAAGAAAGGACCATGGACACCAGAAGAAGACCAAAAACTCATCGATTACATTCAGAAACATGGGTATGGCAACTGGAGATTGCTCCCAAAGAATGCCAGATTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGCCGATTCTCTTTTGAAGAGGAGGAGACGATAATACAACTACATANCATTCTTGGCAACAAGTGGTCTGCCATTGCGTGTCGGTTGCCAGGAAGGACAGACAATGAAATAAAGAACTACTGGAACACACACATTAGAAAAAGGCTTCTAAGGATGGGAATTGATCCTGTGACACATAGTCCACGCCTTGATCTCTTGGACCTCTCTTCCGTCCTAAATTCATCTCTCTATGCTGGCTCATCACAAGTGAACATCCNAAGGCTGTTTGGCACGCAGCCACTGGTGAACCCCGAGATTCTTAAGTTGGCTTCATCACTCTTCTCATCCTCATCTCACCAACAACACCNAGAGAACCAACTCTGCAATAATCCCCAAATTCAGAACCATCAATTCCCACACTTTGTTGATCAAAGTCAGGAATCGGCCCAAGAAGCAGCAGCTTGCAGTACAATGAATTTGAATCCCCCTAATTGTGTTTCATTGCCTTTCACTACTCAAGAACACTTGGTTGAATCCAATTCCATTGCAAACCAATTATACCCATCAATTTCCCCTGACTTTGATGGCCTCCAACAACAACATGCTCAGTTTATAAGTGATTGGCATTGCAACATTAATGGAATTGATTCAAGCACTGTAACAGAGGATTGTGTCCCCTCTTCATTACCAAGCTATAATAACTACTACTTCAGTTCTGATTATCATCATGCAAACGATCATCTTATGGACCCTCCCGTGTCCGAAACCACAACCTTCCATTCCCATAATAACAGCAGCAACCAGAACTTCAGCTTCGCTTCAGTTCTATCCACGCCTTCCTCAAGTCCCAAACCGTTGAATTCGAACTCCACGTATATCAGCAGCACAGAGGATGAGACAGAGAGCTATGTCAGCAGCAACATGTTCNGATTTCAAATCCCAGATATCTTAGGTGTGAATGAGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07839	1089	2678	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007839s00046238.1	PF00249.26	Myb_DNA-binding	14	61	2.50E-15
Glyur007839s00046238.1	PF00249.26	Myb_DNA-binding	67	111	1.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.406
SRR1783600	control	9.510
SRR1783602	moderate drought stress	11.328
SRR1811619	moderate drought stress	11.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.419
DRR006522	Root Winter glycyrrhizin high producing strain	0.408
DRR006523	Root Summer glycyrrhizin low producing strain	0.165
DRR006524	Root Summer glycyrrhizin low producing strain	0.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.501
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.353

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.397
SRR2868004	Drought Stress (root)	5.628
SRR2967015	Control (root)	4.813

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.816
SRR9715740	Leaf	1.064
SRR9715741	Leaf	0.704
SRR9715739	Root	4.667
SRR9715742	Root	4.697
SRR9715743	Root	5.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.764
SRR8749028	MeJA induced 9h	132.655
SRR8749029	MeJA induced 9h	67.339
SRR8749030	Uninduced	15.895
SRR8749031	Uninduced	4.024
SRR8749032	Uninduced	10.170

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.367
SRR8400027	Control - Root	29.690