Gene detail information of Glyur007836s00045751 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43370.1 | 9.00E-14 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | KHN24928.1 | 3.85E-51 | U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Glycine soja] |
| Swissprot | tr|Q8VY74|U1135_ARATH | 6.00E-16 | U11/U12 small nuclear ribonucleoprotein 35 kDa protein |
| trEMBL | tr|K7LAY4|K7LAY4_SOYBN | 2.00E-52 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G48140.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07836 | 232 | 2664 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.443 |
| SRR1783600 | control | 4.300 |
| SRR1783602 | moderate drought stress | 6.389 |
| SRR1811619 | moderate drought stress | 6.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.600 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.789 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.396 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.605 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.907 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.588 |
| SRR2868004 | Drought Stress (root) | 9.859 |
| SRR2967015 | Control (root) | 10.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.191 |
| SRR9715740 | Leaf | 7.525 |
| SRR9715741 | Leaf | 5.488 |
| SRR9715739 | Root | 4.252 |
| SRR9715742 | Root | 4.130 |
| SRR9715743 | Root | 3.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.811 |
| SRR8749028 | MeJA induced 9h | 7.840 |
| SRR8749029 | MeJA induced 9h | 5.571 |
| SRR8749030 | Uninduced | 6.723 |
| SRR8749031 | Uninduced | 1.626 |
| SRR8749032 | Uninduced | 5.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.455 |
| SRR8400027 | Control - Root | 10.945 |