Gene detail

Gene detail information of Glyur007820s00045750.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05260.1	6.00E-98	Peroxidase superfamily protein
NR	KEH29649.1	1.81E-176	peroxidase family protein [Medicago truncatula]
Swissprot	tr\|O23044\|PER3_ARATH	7.00E-121	Peroxidase 3 (Precursor)
trEMBL	tr\|A0A072UIQ7\|A0A072UIQ7_MEDTR	7.00E-177	Peroxidase family protein {ECO:0000313\|EMBL:KEH29649.1}

Sequence

Transcript Sequence

>Glyur007820s00045750.1
GAGTGTCTGAGTTTTCATATCTTCTATGCTCTGGCAATTAAGATCATATCTCTGCCAACTAACTACATGGAAATGGGAAGCCAGAGTTACTTCAGGGTTTTGATTATTTGTCTTATAGCACTAATTGGATCAACCCATGCTCAATTGCAGCAGGGTTACTATGCTAGAAGCTGCCCCAAGGCTGAGAAAATCGTTTTGAAGTATGTTCATGAGCACATTCACAATGCCCCATCACTAGCAGCTGCACTCATAAGACTTCACTTCCACGACTGTTTTGTCAGGGGATGTGATGCATCAGTGCTTCTTAACTCAACAAAAACCAATCAAGCTGAAAAGAGCTCTTTTCCAAATCTTACACTCAGAGGCTTTGAATTCATTGACACGGTAAAGAGGCTTGTTGAAGCTGAATGCCCTGGGGTAGTCTCTTGTGCTGATATCTTAGCNTTGACNGCCAGAGACTCTGTCCATGCCATTGGTGGACCTTATTGGAATGTTCCAACAGGTGCTCACACGATTGGTGTTTCCCATTGCTCAACAATTTCAACCAGGCTGTATAATTTTACTGGGAAGGGTGATCAGGACCCAGATCTAGACAGTGAATATGCAAAGAATCTAAAGACNTTTAAGTGTAAGAATATCAATGACAAAACCACACTTATTGAGATGGACCCTGGAAGTCGCAACACATTTGATGTTAGCTATTACAATCAAGTGGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTGGCTAGCTCCACAACAAGGTCTATCATGGCCCAACAGCTTCAGTCAACTCAAAGATTCTTTTTTGAATTTGCCAAGTCCATGGAGAAAATGGGCCGAATTAATGTCAAGACAGGGGCTGAAGGAGAGATCAGGAAGCATTGTGCGCTAGTAAATAGCTAAAAATATTGTTGTTTATGTCAATTTTTCACAGCACAAAATTTTTTTGGGGGTCTTATTATTTATATCATTTCAATGGTGTGGTACGCAAAAAAAAATGTCAATGGTGTGGTGTCTTTTAATATTGGAGGTAAGCTGTGGTCCGGTTGTTCTCCAAATGATATGGGAATATTTGGTTTAGCAATTCCTGGGTTTGATGGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07820	1537	3395	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007820s00045750.1	PF00141.18	peroxidase	68	168	1.30E-32
Glyur007820s00045750.1	PF00141.18	peroxidase	168	266	3.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.312
SRR1783600	control	3.748
SRR1783602	moderate drought stress	2.248
SRR1811619	moderate drought stress	2.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.008
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.099
DRR006524	Root Summer glycyrrhizin low producing strain	0.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.773
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.414

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	94.040
SRR2868004	Drought Stress (root)	63.853
SRR2967015	Control (root)	54.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.545
SRR9715740	Leaf	0.407
SRR9715741	Leaf	0.753
SRR9715739	Root	0.923
SRR9715742	Root	0.210
SRR9715743	Root	0.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.701
SRR8749028	MeJA induced 9h	1.300
SRR8749029	MeJA induced 9h	1.630
SRR8749030	Uninduced	0.563
SRR8749031	Uninduced	1.596
SRR8749032	Uninduced	0.758

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.705
SRR8400027	Control - Root	7.857