Gene detail information of Glyur007815s00047657 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20600.1 | 1.00E-28 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_004487604.1 | 3.69E-91 | PREDICTED: protein NDR1-like [Cicer arietinum] |
| Swissprot | tr|O48915|NDR1_ARATH | 6.00E-42 | Protein NDR1 (Precursor) |
| trEMBL | tr|D8WJ57|D8WJ57_SOYBN | 5.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G34210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07815 | 161 | 808 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.447 |
| SRR1783600 | control | 10.709 |
| SRR1783602 | moderate drought stress | 15.213 |
| SRR1811619 | moderate drought stress | 14.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.579 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.602 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.893 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 122.976 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.358 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.905 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.866 |
| SRR2868004 | Drought Stress (root) | 20.185 |
| SRR2967015 | Control (root) | 41.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 94.800 |
| SRR9715740 | Leaf | 76.613 |
| SRR9715741 | Leaf | 83.025 |
| SRR9715739 | Root | 233.917 |
| SRR9715742 | Root | 139.223 |
| SRR9715743 | Root | 143.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.168 |
| SRR8749028 | MeJA induced 9h | 36.655 |
| SRR8749029 | MeJA induced 9h | 49.411 |
| SRR8749030 | Uninduced | 36.129 |
| SRR8749031 | Uninduced | 1.790 |
| SRR8749032 | Uninduced | 5.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.861 |
| SRR8400027 | Control - Root | 25.190 |