Gene detail information of Glyur007805s00045744 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12700.1 | 2.00E-86 | ATP binding;nucleic acid binding;helicases |
| NR | XP_004512719.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P0C7Q7|PPR38_ARATH | 2.00E-100 | Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (Precursor) |
| trEMBL | tr|A0A072TFX1|A0A072TFX1_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH16141.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07805 | 1476 | 3343 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007805s00045744.1 | PF13041.1 | PPR_2 | 44 | 91 | 8.00E-10 |
| Glyur007805s00045744.1 | PF12854.2 | PPR_1 | 95 | 126 | 2.30E-06 |
| Glyur007805s00045744.1 | PF13041.1 | PPR_2 | 135 | 182 | 3.90E-17 |
| Glyur007805s00045744.1 | PF13041.1 | PPR_2 | 212 | 251 | 7.00E-09 |
| Glyur007805s00045744.1 | PF13041.1 | PPR_2 | 282 | 323 | 2.50E-14 |
| Glyur007805s00045744.1 | PF13041.1 | PPR_2 | 374 | 420 | 4.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.934 |
| SRR1783600 | control | 2.843 |
| SRR1783602 | moderate drought stress | 3.697 |
| SRR1811619 | moderate drought stress | 3.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.506 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.304 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.816 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.488 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.221 |
| SRR2868004 | Drought Stress (root) | 3.003 |
| SRR2967015 | Control (root) | 2.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.522 |
| SRR9715740 | Leaf | 1.125 |
| SRR9715741 | Leaf | 1.168 |
| SRR9715739 | Root | 0.278 |
| SRR9715742 | Root | 0.480 |
| SRR9715743 | Root | 0.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.692 |
| SRR8749028 | MeJA induced 9h | 2.451 |
| SRR8749029 | MeJA induced 9h | 1.073 |
| SRR8749030 | Uninduced | 1.576 |
| SRR8749031 | Uninduced | 2.023 |
| SRR8749032 | Uninduced | 1.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.955 |
| SRR8400027 | Control - Root | 4.022 |