Gene detail information of Glyur007793s00046176 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22300.1 | 2.00E-44 | carboxylesterases |
| NR | KEH32652.1 | 6.67E-66 | acyl-protein thioesterase, putative [Medicago truncatula] |
| COG | YP_001912044.1 | 3.00E-12 | carboxylesterase [Xanthomonas oryzae pv. oryzae PXO99A] |
| trEMBL | tr|A0A072USL3|A0A072USL3_MEDTR | 2.00E-66 | Acyl-protein thioesterase, putative {ECO:0000313|EMBL:KEH32652.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07793 | 19 | 1407 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007793s00046176.1 | PF02230.11 | Abhydrolase_2 | 2 | 120 | 2.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.897 |
| SRR1783600 | control | 13.116 |
| SRR1783602 | moderate drought stress | 16.155 |
| SRR1811619 | moderate drought stress | 17.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.407 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.555 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.533 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.508 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.739 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.762 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.343 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.036 |
| SRR2868004 | Drought Stress (root) | 31.272 |
| SRR2967015 | Control (root) | 32.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.788 |
| SRR9715740 | Leaf | 26.632 |
| SRR9715741 | Leaf | 24.703 |
| SRR9715739 | Root | 20.385 |
| SRR9715742 | Root | 14.421 |
| SRR9715743 | Root | 15.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.179 |
| SRR8749028 | MeJA induced 9h | 3.698 |
| SRR8749029 | MeJA induced 9h | 12.836 |
| SRR8749030 | Uninduced | 4.851 |
| SRR8749031 | Uninduced | 2.735 |
| SRR8749032 | Uninduced | 5.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.348 |
| SRR8400027 | Control - Root | 25.965 |