Gene detail

Gene detail information of Glyur007784s00044567

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71190.1	6.00E-100	senescence associated gene 18
NR	XP_003547538.1	1.07E-178	PREDICTED: uncharacterized protein LOC100816173 [Glycine max]
trEMBL	tr\|I1MDN5\|I1MDN5_SOYBN	4.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G05100.1}

Sequence

Transcript Sequence

>Glyur007784s00044567.1
AACAGCCACCGCCCACCGTATCGCACACGGCTACTACGGCTTTTCTTTGCCCCGATCGGTTTCCAGTTTCCACCTCATATCGCCTCTGCCTCTGCCTCTGCCTCTGATCTGCTCTGCAGTGCAGTGCGCTAATCAAAGATGAGAAAACACAGCGTTTATGCATGGGTTGTAGCTGTTGTTTGCTTCCTCATACTGATGATTGTAACCCCTGCTATTCCCCAGTCCCAAGAATACCACGATTTCGCTGACCAGCGCACCTTCTTCGGCATTCCCAATGCACTTAACGTGATATCGAATNTCCCTTTTCTGATCATTGGCCTTATTGGACTTATACTTTGTCATCATGGAAACTATTTCAAGCTCAGCTTGCAAGGTGAACTATGGGGTTGGACATGCTTCTATGTTGGGGTGGCTGCAGTTGCAGTTGGATCTTCATACTATCATCTCAAGCCTGATGATGCTCGCCTTGTCTGGGATAGGTTGCCCATGACTGTTGCTTTTACATCGATCATGGCAATNTTCATCATTGAGCGGATTGATGAGAGGAAAGGAATGATCTCAATTACACCCCTAGTTTTGGCTGGTATAATAAGCATTATGTTCTTCAATGACCTCCGTCCATATGCTTTGGTCCAGTTTGCACCATGTATTGCCATTCCTCTCATGGCTATTTTGCTGCCTCCAATGTACACACATTCAACTTATTGGCTCTGGGCTGCAGGGTTTTATCTTCTAGCTAAGGTGCTAGAGGCCACTGATAAGGTGATCTACAAATGGACTCATCACATTGTCAGTGGTCATACACTTAAGCATTTGTNTGCAGCAATGGTTCCTGTCTTCTTGACACTCATGCTTGCAAAGAGGAGTGTTGAAGCAGAAAGGCAAAGTTTGTTTAGAACATGGAGGATTTCCTGGACAAAGGTCAAAGAGGACAAATCCAATGTNGAGAGCTACACTTACTCAAGTGTGCAGGTTGAAGAGCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07784	1	2633	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006672 ceramide metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007784s00044567.1	PF05875.7	Ceramidase	47	156	2.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.477
SRR1783600	control	42.468
SRR1783602	moderate drought stress	46.021
SRR1811619	moderate drought stress	45.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.168
DRR006520	Root Summer glycyrrhizin high producing strain	26.249
DRR006521	Root Winter glycyrrhizin high producing strain	112.089
DRR006522	Root Winter glycyrrhizin high producing strain	108.885
DRR006523	Root Summer glycyrrhizin low producing strain	43.182
DRR006524	Root Summer glycyrrhizin low producing strain	41.445
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.619
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.637

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.920
SRR2868004	Drought Stress (root)	30.144
SRR2967015	Control (root)	28.981

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.460
SRR9715740	Leaf	22.392
SRR9715741	Leaf	28.299
SRR9715739	Root	15.659
SRR9715742	Root	16.172
SRR9715743	Root	19.112

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.604
SRR8749028	MeJA induced 9h	93.941
SRR8749029	MeJA induced 9h	112.884
SRR8749030	Uninduced	97.489
SRR8749031	Uninduced	92.081
SRR8749032	Uninduced	130.736

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.034
SRR8400027	Control - Root	22.350