Gene detail information of Glyur007736s00047059 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27870.1 | 6.00E-14 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_008354134.1 | 4.10E-21 | PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica] |
| trEMBL | tr|A0A096TPA9|A0A096TPA9_MAIZE | 5.00E-20 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G417222_P01} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07736 | 1215 | 2047 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007736s00047059.1 | PF13456.1 | RVT_3 | 76 | 160 | 3.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.420 |
| SRR1783600 | control | 3.265 |
| SRR1783602 | moderate drought stress | 0.909 |
| SRR1811619 | moderate drought stress | 0.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.190 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.101 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.771 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.355 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.260 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.098 |
| SRR2967015 | Control (root) | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.895 |
| SRR9715740 | Leaf | 2.377 |
| SRR9715741 | Leaf | 1.078 |
| SRR9715739 | Root | 0.807 |
| SRR9715742 | Root | 0.350 |
| SRR9715743 | Root | 0.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.738 |
| SRR8400027 | Control - Root | 1.338 |