Gene detail information of Glyur007715s00046699.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21200.1 | 1.00E-28 | gibberellin 2-oxidase 8 |
| NR | XP_003610659.1 | 3.70E-45 | Gibberellin 2-beta-dioxygenase [Medicago truncatula] |
| COG | YP_007565700.1 | 3.00E-07 | putative oxidoreductase [Ilumatobacter coccineus YM16-304] |
| Swissprot | tr|O49561|G2OX8_ARATH | 9.00E-34 | Gibberellin 2-beta-dioxygenase 8 |
| trEMBL | tr|G7K109|G7K109_MEDTR | 1.00E-45 | Gibberellin 2-beta-dioxygenase {ECO:0000313|EMBL:AES93617.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07715 | 2205 | 3021 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04125 | E1.14.11.13 | EC:1.14.11.13 | Diterpenoid biosynthesis | map00904 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007715s00046699.1 | PF03171.15 | 2OG-FeII_Oxy | 25 | 55 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.897 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.400 |
| SRR9715740 | Leaf | 1.424 |
| SRR9715741 | Leaf | 0.981 |
| SRR9715739 | Root | 0.437 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |