Gene detail

Gene detail information of Glyur007626s00044545

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19830.1	6.00E-08	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_007145246.1	6.54E-10	hypothetical protein PHAVU_007G223000g [Phaseolus vulgaris]
COG	YP_003312047.1	9.00E-07	enolase [Veillonella parvula DSM 2008]
Swissprot	tr\|O81864\|FK171_ARATH	5.00E-10	Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic (Precursor)
trEMBL	tr\|V7BJM2\|V7BJM2_PHAVU	2.00E-10	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}

Sequence

Transcript Sequence

>Glyur007626s00044545.1
CAACACCTCTTGTTCCACTATTCTGGAACTCTCTCTTTCCTCTCTATCTCTCTCTCTCTCTCTCTCTGCGCAAAACCCATCTGGCTAAGGGCGATCTCCGGTGACGTCGAGGCCTGGCGGTGCAAGGTGGTCTGTTGTTGCTTCGAGGCTTGGCGGTGCGGTGCGGTTTGTGTTTGTTGGTGCTGTGGTTCGGTCTTCCTACGGTCTGGGTCCGTTCTAGGCGCGATCTAGGTGTGTGGCAGTCCGGTTGCTACGAGGTGCTTCGGCGAGGCGTCCTATTGTGAGGTGGTCACGGCTGTGTACCCTCCAAAGAGTTATTGCTGGAATTGAGGTGGCAGTGAGATCAATGAAAGNAGGTGGTATTCGTAGAGTGATCATACCTCCATCACTTGAGTATCAAAACACATCACAGGAACCCATCCCACCTAATATCAAGACTGGAGCTCCCGACAGATCCGAAAGGCTTTCTAAGTACAACCAGGTAAAACTGTAAAACTATTTTATCTTAGTTATACCTTTGAAAATTGGATAGAAAAAAGGTCAAACTTATCTGCAATTGTACCATTTAATTGTAAATGTCTTAGATCGAAGTCAATGTAGCAACAACAATTTCAGTTTCTAGCAATGATAACGAAGCTTATTCTATTTGGTTTTTTTTTTTTTACATATTTTAGTATCAAATACTGATCCTTTATATTGTCTTAATGAATTACCCTCGCATATTATTTTGGTGTTCCAGCCATTCTTCTCAGCAATTTTGGTTGTCTGTGGTNTTGNATCTTGCTTCGCAGAAATGTAGAGGATAGAGGTGTACTTGACACGCATGAAGCTATTGGTGTAGGTTATGCTTATTATTTGACATAAATTTAGGTGCTATGTTATTACCGACATTAAGCTCAGCTCATTATCCTTTCAAATGGAGTGTAATAATTTTTCCTCTAAAAGTATATATTGTTTCTTACTATTTCATTAATGTAGCTGATTGGATGAATCTAAGCATCTAACATTTTTTCTATTGTTTTTGTACTCCTTTTTTCTCTAGTCATTTCAATTTTCAATTGCAATTATTAATAGTGATAGTGGACCAGCACCTATTGACTATTGTAAAATAAAAGTTTTACCAGCACTCACAATAATTGNCGGTAAAACTTTTACNGACACTGCATTCAATGGCCATTGTTGATTGTTAATAGAGATTTGAGATCAATAGGTTTGATCCTGTTAATATTCTATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07626	110	3186	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007626s00044545.1	PF00254.23	FKBP_C	1	28	9.10E-05
Glyur007626s00044545.2	PF00254.23	FKBP_C	1	41	7.00E-08
Glyur007626s00044545.2	PF00113.17	Enolase_C	50	85	1.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.365
SRR1783600	control	2.262
SRR1783602	moderate drought stress	1.490
SRR1811619	moderate drought stress	1.289

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.555
DRR006520	Root Summer glycyrrhizin high producing strain	7.752
DRR006521	Root Winter glycyrrhizin high producing strain	24.993
DRR006522	Root Winter glycyrrhizin high producing strain	24.620
DRR006523	Root Summer glycyrrhizin low producing strain	1.595
DRR006524	Root Summer glycyrrhizin low producing strain	1.803
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.335
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.154
SRR2868004	Drought Stress (root)	14.224
SRR2967015	Control (root)	15.854

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.329
SRR9715740	Leaf	4.858
SRR9715741	Leaf	7.123
SRR9715739	Root	5.584
SRR9715742	Root	8.114
SRR9715743	Root	7.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.473
SRR8749028	MeJA induced 9h	17.620
SRR8749029	MeJA induced 9h	15.974
SRR8749030	Uninduced	18.429
SRR8749031	Uninduced	22.038
SRR8749032	Uninduced	14.395

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.571
SRR8400027	Control - Root	13.049