Gene detail information of Glyur007618s00047434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26690.1 | 7.00E-45 | Major facilitator superfamily protein |
| NR | CAD33927.1 | 8.74E-98 | nitrate transporter [Cicer arietinum] |
| Swissprot | tr|Q9SZY4|PTR27_ARATH | 1.00E-72 | Protein NRT1/ PTR FAMILY 6.2 |
| trEMBL | tr|Q8L5G1|Q8L5G1_CICAR | 3.00E-98 | Nitrate transporter {ECO:0000313|EMBL:CAD33927.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07618 | 4 | 531 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007618s00047434.1 | PF00854.16 | PTR2 | 1 | 91 | 5.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.354 |
| SRR1783600 | control | 40.090 |
| SRR1783602 | moderate drought stress | 57.355 |
| SRR1811619 | moderate drought stress | 58.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 199.759 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 199.105 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 150.059 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 146.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 163.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 166.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.738 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 113.106 |
| SRR2868004 | Drought Stress (root) | 76.435 |
| SRR2967015 | Control (root) | 141.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.253 |
| SRR9715740 | Leaf | 33.748 |
| SRR9715741 | Leaf | 31.357 |
| SRR9715739 | Root | 15.049 |
| SRR9715742 | Root | 64.631 |
| SRR9715743 | Root | 60.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.434 |
| SRR8749028 | MeJA induced 9h | 2.069 |
| SRR8749029 | MeJA induced 9h | 0.947 |
| SRR8749030 | Uninduced | 0.414 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.690 |
| SRR8400027 | Control - Root | 32.780 |