Gene detail information of Glyur007606s00046215 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16715.1 | 7.00E-31 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases |
| NR | XP_004489655.1 | 1.09E-49 | PREDICTED: valine--tRNA ligase-like [Cicer arietinum] |
| COG | YP_004175367.1 | 1.00E-19 | valyl-tRNA synthetase [Anaerolinea thermophila UNI-1] |
| Swissprot | tr|P93736|SYV_ARATH | 2.00E-11 | Valine--tRNA ligase |
| trEMBL | tr|K7MMG6|K7MMG6_SOYBN | 5.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G24046.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07606 | 1772 | 3630 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01873 | VARS, valS | EC:6.1.1.9 | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007606s00046215.1 | PF00133.17 | tRNA-synt_1 | 90 | 134 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.791 |
| SRR1783600 | control | 9.627 |
| SRR1783602 | moderate drought stress | 7.931 |
| SRR1811619 | moderate drought stress | 8.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.832 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.763 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.508 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.963 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.966 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.911 |
| SRR2868004 | Drought Stress (root) | 4.095 |
| SRR2967015 | Control (root) | 4.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.380 |
| SRR9715740 | Leaf | 4.984 |
| SRR9715741 | Leaf | 3.253 |
| SRR9715739 | Root | 0.475 |
| SRR9715742 | Root | 5.685 |
| SRR9715743 | Root | 3.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.278 |
| SRR8749028 | MeJA induced 9h | 5.000 |
| SRR8749029 | MeJA induced 9h | 0.933 |
| SRR8749030 | Uninduced | 0.423 |
| SRR8749031 | Uninduced | 0.293 |
| SRR8749032 | Uninduced | 0.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.687 |
| SRR8400027 | Control - Root | 6.904 |