Gene detail

Gene detail information of Glyur007588s00044422

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G42170.1	3.00E-21	BED zinc finger ;hAT family dimerisation domain
NR	CAN78233.1	7.28E-46	hypothetical protein VITISV_027466 [Vitis vinifera]
Swissprot	tr\|Q9M2N5\|DSLE_ARATH	1.00E-22	Zinc finger BED domain-containing protein DAYSLEEPER
trEMBL	tr\|A5AS09\|A5AS09_VITVI	3.00E-46	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78233.1}

Sequence

Transcript Sequence

>Glyur007588s00044422.1
ATGCTTGCCTTGCGCCGTTTCACTCTTCCTTCTTCCCTCTTCCAAGTTCCACTCTTCCAAATCCAGATCAGTTCCTCACTTCCCAAATCCAGACTTCTTTCCAAATCTGCCACTCTTCCACTCTTCCCAAATCCAGATCAGTTCCACTCTTCCTCACCCTCGTCGTCGCTCCACAGATCTCCTTCGCAGCCATTCTCGGACCACTTCGCAGCCTCAATGTCTTCTGAACAAGCCTCTGCTCCTATGGAAAATATTCAAGAGCAATTGCAACCCACAACTAATAAGGATGAATCCAATGTGGCTCTATCAAATGCTAGTTCTATGAATGTAGAAACTAGTGCAACTCCTCAAGAAACTCAAAGCTCAATGCCAAGTCAAGGAGCTGACAGTCGTCGAAGAAAGCAAACTTCAGATGTTTGGAATCATTTCAAAAGGCAAAATATAGATGGAAATTGGAAGGCCATTTGCAATTATTGTGGCTCAAAACTTTTGGGGGAANCAAAGCAAGGAACATCACACTTGCGTAGCCACTTCAATTCTTGCAAACTCCGAACAATTCGAGATATAAGGCAAGCTTTTATCAAAACTGAAAAAGTTGGGAATGACACTGTAGTGGTTGGTTCTTATGCATTTAATCAAGATGTAGCAAGGCNTGCAATTTGTAAGATGATAATTCTTCATGAGTATCCTATGGCGATGGTTGAGCACATTGGTTTTAAAGAATTTTGTGCTTCTTTACAACCTTTATTTAAGGTGGTTTCTCGCAATACTATCAAGACTGATATCTTGAAAATTTATAAGGATGAGAAAGATAATATGAAGAAGTTGATGAAAAAGATTGAAAGTCGTGTTGCAATTACTGACCACTTCAGGAGCACCACTTTGACTGCTTGATTCCTGAAATAAAAACTTCCAAATAAAAGTCCAAGCAAACAATATAAATATTAATTAAAAAACTTGAAATGAAATCTTAAAAATATTCACTAACAATGTCATCATCAATATCTTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07588	1388	3774	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007588s00044422.1	PF02892.10	zf-BED	137	181	9.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.724
SRR1783600	control	12.485
SRR1783602	moderate drought stress	8.483
SRR1811619	moderate drought stress	8.951

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	109.241
DRR006520	Root Summer glycyrrhizin high producing strain	106.584
DRR006521	Root Winter glycyrrhizin high producing strain	44.349
DRR006522	Root Winter glycyrrhizin high producing strain	42.820
DRR006523	Root Summer glycyrrhizin low producing strain	0.943
DRR006524	Root Summer glycyrrhizin low producing strain	0.767
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.892
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.713
SRR2868004	Drought Stress (root)	30.864
SRR2967015	Control (root)	26.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.547
SRR9715740	Leaf	13.128
SRR9715741	Leaf	1.383
SRR9715739	Root	5.878
SRR9715742	Root	2.072
SRR9715743	Root	2.459

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.264
SRR8749028	MeJA induced 9h	1.057
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.447
SRR8749031	Uninduced	0.457
SRR8749032	Uninduced	0.298

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.145
SRR8400027	Control - Root	25.022