Gene detail

Gene detail information of Glyur007536s00044196

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18670.1	1.00E-36	Ankyrin repeat family protein
NR	XP_004486279.1	0	PREDICTED: uncharacterized protein LOC101488457 [Cicer arietinum]
Swissprot	tr\|Q9C7A2\|Y3236_ARATH	2.00E-12	Ankyrin repeat-containing protein At3g12360
trEMBL	tr\|G7ILT7\|G7ILT7_MEDTR	0	Ankyrin repeat protein {ECO:0000313\|EMBL:AES64064.2}

Sequence

Transcript Sequence

>Glyur007536s00044196.1
ATGCCATCTGCATTCAAGAGTCAAACCCAAATGGGAGTCTTCAAAAATTTGATATATCCTTTGCTTCCTGATTATCAAGATTATAAATACTACTTTCAACATAAAGATGATACTAGAAAAGGAGAAGATTTGGAAAGCGGCAAAACGGGCATAAATGAACCATATCAAACACAAAGNAAGCATGAACCACCTCAAAGTGATAGGAAGCTCTCAGCTTTTTCATGGATGTGGTATACTATGTGGAAGACTCTGGCCAAAGAATGGAAGGGGGTAGAAAAACTTTGGAGGAAAAAGGAAATGCATATCTTGGCACAGGAACTTGTAACCTTGTTAGCAAAGAAAGATAATTCGTGGCAACATAGTTCCATAGCAATGGATAGAACAGTTTCGATGGGGGGATCACATCATCGAAGCAATATAAGACCAGATGGAGAGAAACAAGAAAAGCAAGAGAAACAAAAGGAACAAGAGGTTGCAAGCAAGCCTCTTATTTATACCCCATTGCTTATGGCAGCTTGCAATGGAATTAAAGAGATTGTTGAAGAAATAATTCATTTGCATCCTCAGTCAATTGAGCATGTCAGTGAAGATGAGCAGAACATATTGTACATGGTTGTCAAACACCGACAGCTGGAAATCTTCCGAATGCTAAAGAAATTGAAAATGGTGAGACGTCTTGCTGGCAAAATAGACAAGGAAAGTAACACAGTCCTACACTATACTGCATATTTTAAAGGGGGATCTCAACCTGGTTATGCCCTGCAATTGCAAGAGGAGTTGCATTGGTTTGAAAACAACCAAACTGCATGGGAATTTTTTGAGGAAAAGCATGAACAGCTGCTGAAGGATGCTCGTGAATGGATAAAAGAGACAGCTCAGTCATGCTCTGCAGTGGCCGTCCTTGTTGCCACCGTTGTCTTCGCAGCAGCCTACACTGTCCCGGGAGGCACAGACGAGAACGGCCTCCCGAGATTTCTTCACCGTCCCATATTCTTAGTGTTCACAATCATGGATGTTGTGGCCCTTGCAAGTTCATTGGCTTCAGTGATCATGTTCCTCTCAATCCTCACATCACCTTGTGAGATGTGGGATTTTAGGAGGTCTCTACCAAGGAAACTAATGGCAGGCTTTGCATTCTTGTTCTTTTCCATGGCCACAACGATGTTGTCATTTAGTGCAACAATTCTGATCAACATCAAGCTGGAGAAGAACAAGTGGACTTCGAGCTTGACTTATAGTGCGGCGTTCTTCCCTGTTAGCATATTTGCAATGATGCAGTTCCCTTTGTATGTTGCTGTTAGAGGATGTGTGCGGAGCCTCCTCAGGAGACTTAAGAAGATCATTCCTCGTTTCTTCCTCAATTTGATCGAAAGGAGAAAGAGAAATAGACTATGGGAGGACATGGACATGGACATGGACATGGACGTCAATGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07536	1588	4034	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007536s00044196.1	PF13962.1	PGG	286	396	1.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.770
SRR1783600	control	0.876
SRR1783602	moderate drought stress	1.114
SRR1811619	moderate drought stress	1.067

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.659
DRR006520	Root Summer glycyrrhizin high producing strain	3.565
DRR006521	Root Winter glycyrrhizin high producing strain	0.648
DRR006522	Root Winter glycyrrhizin high producing strain	0.681
DRR006523	Root Summer glycyrrhizin low producing strain	2.237
DRR006524	Root Summer glycyrrhizin low producing strain	1.881
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.227
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.149

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.344
SRR2868004	Drought Stress (root)	3.794
SRR2967015	Control (root)	5.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.992
SRR9715740	Leaf	0.444
SRR9715741	Leaf	0.691
SRR9715739	Root	0.136
SRR9715742	Root	1.612
SRR9715743	Root	0.999

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.735
SRR8749028	MeJA induced 9h	0.176
SRR8749029	MeJA induced 9h	0.645
SRR8749030	Uninduced	0.649
SRR8749031	Uninduced	0.975
SRR8749032	Uninduced	3.668

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.567
SRR8400027	Control - Root	1.793