Gene detail

Gene detail information of Glyur007536s00044195

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29800.2	3.00E-39	RING/FYVE/PHD-type zinc finger family protein
NR	XP_004485938.1	2.32E-75	PREDICTED: uncharacterized protein LOC101488791 [Cicer arietinum]
COG	YP_847787.1	1.00E-18	hypothetical protein Sfum_3682 [Syntrophobacter fumaroxidans MPOB]
trEMBL	tr\|A0A072V5L4\|A0A072V5L4_MEDTR	2.00E-73	RING/FYVE/PHD-type zinc finger protein {ECO:0000313\|EMBL:KEH36648.1}

Sequence

Transcript Sequence

>Glyur007536s00044195.1
GCTGGAGGAGAGTTAACAGACTTTATTATTGTTCTGAGAACAAATGACGCTGTCAAGACATTTAGTGGTAATGTACATCTTTCACTTGGAGCTGGTTTGAGTGCTGCAGTCGGTGTTGTTGGAAGGGCAGCTGAAGCTGATGTTCGAGCTGGTGACGGTGGCTATGCTGCTTGCTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGGTGTTCACTTGAAGGCAGTGTTGTCACCACTCGCACACAAGAAAATAGTCGTTTNTATGGCAGCCAATCTATAACTGCAACAGATATACTTCTTGGNTCGTTGCCTAGGCCACCTGCTGCCGCCATCCTCTACCGTGCTCTTGCTGATCTGTATTTGAAGATTGATGGTTAATCGAATGGTTCAACATCGCATTTCATATTCCTTTCGTTTTTTGGACATAAGCAATTAAGCATTAAGGAAAAGAAAGAACTATTGGATTGGATTGAACCGTCAATAATTTGTACAGCTGCGCTAATTCCCACTAAGATTTTAAATTTCGTCGTGTCACATTATTTGTCATGTAAATATAGATATTGTATACTCTATTCTGACCAAGATGGAGGGTTGGTGACCTGTTTTAAGGTTTATCTTATTTGGCTACACAGTGGGCTAGAGTTATCCTATAGTTATAGTTATTTTACCACAAATCACAAGTAAGGCATAACCATACAAGGAAAAAGTACGCTCTTATTCATTGACGTCCATGTCCATGTCCATGTCCATGTCCTCCCATAGTCTATTTCTCTTTCTCCTTTCGATCAAATTGAGGAAGAAACGAGGAATGATCTTCTTAAGTCTCCTGAGGAGGCTCCGCACACATCCTCTAACAGCAACATACAAAGGGAACTGCATCATTGCAAATATGCTAACAGGGAAGAACGCCGCACTATAAGTCAAGCTCGAAGTCCACTTGTTCTTCTCCAGCTTGATGTTGATCAGAATTGTTGCACTAAATGACAACATCGTTGTGGCCATGGAAAAGAACAAGAATGCAAAGCCTGCCATTAGTTTCCTTGGTAGAGACCTCCTAAAATCCCACATCTCACAAGGTGATGTGAGGATTGAGAGGAACATGATCACTGAAGCCAATGAACTTGCAAGGGCCACAACATCCATGATTGTGAACACTAAGAATATGGGACGGTGAAGAAATCTCGGGAGGCCGTTCTCGTCTGTGCCTCCCGGGACAGTGTAGGCTGCTGCGAAGACAACGGTGGCAACAAGGACGGCCACTGCAGAGCATGACTGAGCTGTCTCTTTTATCCATTCACGAGCATCCTTCAGCAGCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07536	306	2191	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007536s00044195.1	PF04366.7	DUF500	1	119	8.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.736
SRR1783600	control	7.758
SRR1783602	moderate drought stress	11.382
SRR1811619	moderate drought stress	11.346

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.823
DRR006520	Root Summer glycyrrhizin high producing strain	8.513
DRR006521	Root Winter glycyrrhizin high producing strain	5.272
DRR006522	Root Winter glycyrrhizin high producing strain	5.685
DRR006523	Root Summer glycyrrhizin low producing strain	9.783
DRR006524	Root Summer glycyrrhizin low producing strain	9.743
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.284
SRR2868004	Drought Stress (root)	8.783
SRR2967015	Control (root)	8.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.508
SRR9715740	Leaf	12.259
SRR9715741	Leaf	11.276
SRR9715739	Root	4.570
SRR9715742	Root	5.992
SRR9715743	Root	6.647

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.098
SRR8749028	MeJA induced 9h	6.975
SRR8749029	MeJA induced 9h	12.125
SRR8749030	Uninduced	12.756
SRR8749031	Uninduced	26.742
SRR8749032	Uninduced	27.602

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.609
SRR8400027	Control - Root	9.554