Gene detail information of Glyur007526s00046545 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45580.1 | 3.00E-20 | cytochrome P450, family 76, subfamily C, polypeptide 3 |
| NR | AFK46798.1 | 2.91E-71 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8VWZ7|C76B6_CATRO | 1.00E-39 | Geraniol 8-hydroxylase |
| trEMBL | tr|I3T2Q6|I3T2Q6_MEDTR | 1.00E-71 | Uncharacterized protein {ECO:0000313|EMBL:AFK46798.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07526 | 725 | 3621 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP76C3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007526s00046545.1 | PF00067.17 | p450 | 42 | 156 | 2.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.106 |
| SRR1783600 | control | 1.298 |
| SRR1783602 | moderate drought stress | 0.527 |
| SRR1811619 | moderate drought stress | 0.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.314 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.897 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.519 |
| SRR2868004 | Drought Stress (root) | 5.131 |
| SRR2967015 | Control (root) | 2.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.958 |
| SRR9715740 | Leaf | 4.089 |
| SRR9715741 | Leaf | 22.111 |
| SRR9715739 | Root | 1.138 |
| SRR9715742 | Root | 4.805 |
| SRR9715743 | Root | 3.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.586 |
| SRR8749028 | MeJA induced 9h | 5.753 |
| SRR8749029 | MeJA induced 9h | 0.582 |
| SRR8749030 | Uninduced | 2.646 |
| SRR8749031 | Uninduced | 9.167 |
| SRR8749032 | Uninduced | 1.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.493 |
| SRR8400027 | Control - Root | 4.723 |