Gene detail

Gene detail information of Glyur007502s00042768

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24503.1	1.00E-158	aldehyde dehydrogenase 2C4
NR	XP_007152818.1	0	hypothetical protein PHAVU_004G162300g [Phaseolus vulgaris]
COG	YP_007058635.1	5.00E-138	NAD-dependent aldehyde dehydrogenase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q56YU0\|AL2C4_ARATH	0	Aldehyde dehydrogenase family 2 member C4
trEMBL	tr\|V7C3S3\|V7C3S3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW24812.1}

Sequence

Transcript Sequence

>Glyur007502s00042768.1
CTGGATACCATTGATGGAGGGAAGCTATACANTTGGTGTAAGGATGTGGATGTTCCTGAAGCAGCCAATATCCTACGTTACTATGCTGGTGCTGCTGATAAAATCCATGGANATGTGTTCAAAACTTCNAGNNACCTNCANTTGTATACANTGATGGAACCTATTGGTGTTNTTGGACACATTATCCCTTGGAATTTCCCAACCGTTATGTTCTTTGCTAAGGTTAGCCCTGCCTTGGCTGCTGGTTGCACCATGGTCCTCAAGCCTGCTGAGCAAACACCTCTCTCATCGCTCTTTTATGCGCATCTTGCTAAGCAGGCTGGTATACCAGATGGAGTGCTCAATGTACTCCCCGGATTTGGCTCAACTGCTGGGGCTGCAATAGCCTCACACATGGACATTGATGCGATCAGTTTCACAGGCTCAACAGAAACCGGTCGCCGAGTAATGCAGGCCGCGGCGATGAGCAATTTGAAACCTGTTTCACTTGAATTGGGAGGCAAGTCTCCTGTCTTGATTTTTGATGATGCTGATGTAGATAAAGCTGTTGAACTTGCTCTCTTTGGTATTCTACACAACAAGGGAGAAATCTGTGTTGCATTTTCCAGAGTTTTTGTCCAGGAAGGGATTTATGATGAATTTGAGAAGAAGCTAGTGGAGAAGGCAAAAACTTGGGTAGTTGGGGACCCTTTTGATCCTAAAGTTCAACAAGGACCCCAAACTAGTAAGGCACAATTTGATAAAATTCTTTCCTATATTGAGCATGGAAAGAATGAAGGAGCCACCCTTTTGACAGGTGGTAAAAGAGTGGGAAACAAGGGTTACTACATTGAACCTACTATTTTTGCCTATGTTAAGGAGGATATGCTGATAGCACAAGATGAAATATTTGGACCTGTGATGGCACTTTCTAAGTTCAAGACCATTGAGGAAGCAATTAAGAAAGCCAACAACACCAGATATGGCCTAGCAGCAGGGATTGTGACCAAGAACTTGGACATTGCCAACACTGTCTCAAGGTCCATCCGTGCCGGCATCATTTGGATCAACTGCTTCTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTACAAGATGAGTGGGTTTGGAAGAGATTATGGATTGGAAGCACTTAACAAGTATCTTCAAGTTAAATCTGTAGCAACTCCTATTCACAATTCTCCATGGCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07502	69	2587	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12355	REF1	EC:1.2.1.68	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007502s00042768.1	PF00171.17	Aldedh	2	336	8.20E-143

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.882
SRR1783600	control	1.889
SRR1783602	moderate drought stress	2.618
SRR1811619	moderate drought stress	2.609

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.741
DRR006520	Root Summer glycyrrhizin high producing strain	1.812
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.442
DRR006524	Root Summer glycyrrhizin low producing strain	0.323
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.862
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.659

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.290
SRR2868004	Drought Stress (root)	17.408
SRR2967015	Control (root)	14.809

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.426
SRR9715740	Leaf	1.836
SRR9715741	Leaf	4.578
SRR9715739	Root	0.395
SRR9715742	Root	1.265
SRR9715743	Root	1.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.484
SRR8749028	MeJA induced 9h	11.624
SRR8749029	MeJA induced 9h	3.407
SRR8749030	Uninduced	94.003
SRR8749031	Uninduced	51.202
SRR8749032	Uninduced	27.687

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.576
SRR8400027	Control - Root	12.556