Gene detail information of Glyur007480s00046432.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15950.2 | 5.00E-19 | cinnamoyl coa reductase 1 |
| NR | XP_003529771.1 | 2.02E-28 | PREDICTED: cinnamoyl-CoA reductase 1-like [Glycine max] |
| Swissprot | tr|Q9S9N9|CCR1_ARATH | 3.00E-22 | Cinnamoyl-CoA reductase 1 |
| trEMBL | tr|I1KGT7|I1KGT7_SOYBN | 8.00E-29 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07480 | 33 | 1945 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09753 | CCR | EC:1.2.1.44 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.799 |
| SRR1783600 | control | 26.907 |
| SRR1783602 | moderate drought stress | 13.260 |
| SRR1811619 | moderate drought stress | 15.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.343 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.235 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.996 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.184 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.857 |
| SRR2868004 | Drought Stress (root) | 8.769 |
| SRR2967015 | Control (root) | 13.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.346 |
| SRR9715740 | Leaf | 0.563 |
| SRR9715741 | Leaf | 0.910 |
| SRR9715739 | Root | 0.642 |
| SRR9715742 | Root | 1.437 |
| SRR9715743 | Root | 1.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.078 |
| SRR8749028 | MeJA induced 9h | 7.380 |
| SRR8749029 | MeJA induced 9h | 0.711 |
| SRR8749030 | Uninduced | 6.151 |
| SRR8749031 | Uninduced | 0.684 |
| SRR8749032 | Uninduced | 15.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.528 |
| SRR8400027 | Control - Root | 0.227 |