Gene detail

Gene detail information of Glyur007448s00041752

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	2.00E-52	NB-ARC domain-containing disease resistance protein
NR	AES70497.2	0	NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_005323380.1	7.00E-07	putative lipoprotein [Saprospira grandis str. Lewin]
Swissprot	tr\|Q39214\|RPM1_ARATH	3.00E-56	Disease resistance protein RPM1
trEMBL	tr\|G7J1I4\|G7J1I4_MEDTR	0	NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES70497.2}

Sequence

Transcript Sequence

>Glyur007448s00041752.1
ATGAAGGATACAAGTGGAATAAGAGATAGAGATGGCTCCCAAATCCAATCTTGTTCCGAAACAAACCAAAATGCCACGTTGAATAACCTTAGAAAGGCTCCATTTTACATTGAGGAAGGTCAAGTTGTGGGGTTTGAAGCCTCCAGAGATGAATTGATTGAGCGCACTGTCGTCTCTGTGGTGGGAATGGGAGGACAAGGAAAAACCACTCTTGCCAAGAAAGTTTTTGACAGCAAGGAGGTCACTGGGCACTTCAATTGTCGTGTATGGATCACAGTGTCTCAATCATACACAGTAGAAAGGTTGCTGAGGGACATGTTGCGCGAGTTCTACAAACAAAAAGGGAAGGATCCTCCTCCTCAGGGTATCTTTGAAATGGATGGGAATTCATTGACTGATGAGGTGAGAAACTACTTGCAAGATAAAAGGCATGTCCTCTTGTTTGATGGTGTATGGAATGATCGCTTTTGGGAGGAGTTTGAATTTGCTTTGTTGAAACCTTTGAATCATGGAAAACCTTTTGAGCTCTTCTGTAAGAAGGCGTTCTTTGACTTGAAAGAAGTTTGTCCTGAAAATCTATTTAGTGAAAATCTAAGCTCAGAATTGGACAACAATCCCCGTTTAACTGTTGTAACAATGATTCTAGGCTTCAGTTTTCATGATTTACCTTACCATCTCAAACGATGCTTCTTATATTTTGCAATATACCCTGAAGACTATGAAGTTAAAACCATGAGACTAATTCAAAAATGGGTGGCTGAGGGGTTTGTCAAGGATGAAATGGGGAAAACATTGGAGGAATTTGGTTCAAGCTTAAGTTTTTGCCATTTTGCTAGTGAAAATGTGGACCAATTATCAGTCCCCGGTTGGATGATTCGTCGCCTAACAATAGCAACCAGTTATTCCAACAATTTGATGGGGAGTGTTGAATGCTCAAACATTCGGTCACTTCATGTTTTCAGAAACAAAGAGTTGCAAGATTCCTTTGTAACAAGTATCCCTTCAAAGTACAAGTTACTAAAGGTACTTGATTTTGAAAATGTTCTGTTGCATCATTATGTTCCACAAAACTTGGGGGATTTATTCCACTTGAGGTATTTAAGCTTCAGAAACACAAAGGTGAGCAATCTTCCAAGGTCCATTGGTATGCTCCACAACCTAGAGACCTTAGATGTAAGGCGAACCACGGTGCACGAGATGCCAAGAGAGATTAACAAGCTTAGAAAGCTAAGACACCTTTTGGCTTATGATAAGTCCAAGGCTGTTGGATATGGAATTGAAATGAAGGATGGCATTGGAGACATAACATCCCTACAAACACTACGTGAAGTGGAAGCAGATCATGGTGGAGTTGAGCTAATCACAGAGCTTGAAAGGGTCACACAGGTAAGGATGTTGGGGTTGACTAATGTTAAGCAAGAATACACAAGTGCTATGTGTTCCTCAATAAAGGAGATGCGACAATTGGAGAAACTATACATTGCTGCAATAGATAAACATGAGGAAGCTTTGCCTTATAGGGAAGTTAGAGGGGTTCTCATATTTGATCTTCCAAACTTGTTGTACCTTACCATCCTCTACCGTGCATATGAAGGTGAACACTTGCATTTTCCAGATAAAGGGTTTAGGAACCTCAAGCAACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07448	2006	4128	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007448s00041752.1	PF00931.17	NB-ARC	54	163	1.20E-26
Glyur007448s00041752.1	PF00931.17	NB-ARC	196	259	2.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.857
SRR1783600	control	0.837
SRR1783602	moderate drought stress	1.469
SRR1811619	moderate drought stress	1.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.506
DRR006520	Root Summer glycyrrhizin high producing strain	0.560
DRR006521	Root Winter glycyrrhizin high producing strain	1.653
DRR006522	Root Winter glycyrrhizin high producing strain	1.790
DRR006523	Root Summer glycyrrhizin low producing strain	1.355
DRR006524	Root Summer glycyrrhizin low producing strain	1.511
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.608
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.529

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.441
SRR2868004	Drought Stress (root)	1.294
SRR2967015	Control (root)	1.847

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.350
SRR9715740	Leaf	0.385
SRR9715741	Leaf	0.682
SRR9715739	Root	0.075
SRR9715742	Root	1.104
SRR9715743	Root	0.816

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.282
SRR8749028	MeJA induced 9h	2.703
SRR8749029	MeJA induced 9h	1.159
SRR8749030	Uninduced	1.269
SRR8749031	Uninduced	0.612
SRR8749032	Uninduced	0.699

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.831
SRR8400027	Control - Root	0.703