Gene detail information of Glyur007388s00045515.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23280.1 | 5.00E-34 | TCP family transcription factor |
| NR | XP_004498111.1 | 6.20E-104 | PREDICTED: transcription factor TCP7-like [Cicer arietinum] |
| Swissprot | tr|Q9FMX2|TCP7_ARATH | 4.00E-80 | Transcription factor TCP7 |
| trEMBL | tr|I1LF87|I1LF87_SOYBN | 3.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07388 | 3186 | 3956 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007388s00045515.1 | PF03634.8 | TCP | 32 | 216 | 5.10E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 121.317 |
| SRR1783600 | control | 125.244 |
| SRR1783602 | moderate drought stress | 141.281 |
| SRR1811619 | moderate drought stress | 144.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 114.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 115.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.043 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.895 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 177.932 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 174.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.801 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 87.929 |
| SRR2868004 | Drought Stress (root) | 76.762 |
| SRR2967015 | Control (root) | 91.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.127 |
| SRR9715740 | Leaf | 62.462 |
| SRR9715741 | Leaf | 82.314 |
| SRR9715739 | Root | 230.723 |
| SRR9715742 | Root | 196.245 |
| SRR9715743 | Root | 166.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.065 |
| SRR8749028 | MeJA induced 9h | 24.952 |
| SRR8749029 | MeJA induced 9h | 11.816 |
| SRR8749030 | Uninduced | 10.987 |
| SRR8749031 | Uninduced | 3.303 |
| SRR8749032 | Uninduced | 5.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 133.872 |
| SRR8400027 | Control - Root | 146.237 |