Gene detail information of Glyur007299s00046714 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67360.2 | 4.00E-16 | Rubber elongation factor protein (REF) |
| NR | AFK45887.1 | 5.78E-41 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SW70|SRP_VITRI | 6.00E-26 | Stress-related protein |
| trEMBL | tr|I3T045|I3T045_LOTJA | 2.00E-41 | Uncharacterized protein {ECO:0000313|EMBL:AFK45887.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07299 | 820 | 1375 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007299s00046714.1 | PF05755.7 | REF | 12 | 87 | 1.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.378 |
| SRR1783600 | control | 27.851 |
| SRR1783602 | moderate drought stress | 27.141 |
| SRR1811619 | moderate drought stress | 29.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.727 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.803 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.549 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.607 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 94.587 |
| SRR2868004 | Drought Stress (root) | 68.028 |
| SRR2967015 | Control (root) | 56.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.819 |
| SRR9715740 | Leaf | 44.935 |
| SRR9715741 | Leaf | 46.889 |
| SRR9715739 | Root | 15.525 |
| SRR9715742 | Root | 26.823 |
| SRR9715743 | Root | 22.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 158.676 |
| SRR8749028 | MeJA induced 9h | 47.823 |
| SRR8749029 | MeJA induced 9h | 58.172 |
| SRR8749030 | Uninduced | 1.873 |
| SRR8749031 | Uninduced | 1.578 |
| SRR8749032 | Uninduced | 2.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 70.926 |
| SRR8400027 | Control - Root | 66.179 |