Gene detail

Gene detail information of Glyur007288s00045607

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62180.1	1.00E-90	carboxyesterase 20
NR	XP_003592370.1	4.79E-179	CXE carboxylesterase [Medicago truncatula]
COG	YP_706618.1	5.00E-23	esterase [Rhodococcus jostii RHA1]
Swissprot	tr\|Q0ZPV7\|CXE1_ACTER	1.00E-124	Carboxylesterase 1
trEMBL	tr\|G7IC52\|G7IC52_MEDTR	2.00E-179	Gibberellin receptor GID1, putative {ECO:0000313\|EMBL:AES62621.1}

Sequence

Transcript Sequence

>Glyur007288s00045607.1
ATGTCAGGCCAACCCGTTTCGCTTCACGCCGTTGATCCCTTCGTCCATCTCAAAATAGCCCCGAATTCCGACGGCACGATCACTCGCCTGCGTGGAGACCCACACGCCCCACCCTCACCCGATCCCAGCCTTCCCATCCCCGTTCTCACCAAAGACGCACCCATCAACCAGTCACACAACACCTCTGCTCGCATATTCCTACCCCGCAAAGCACTACTTGACCACTCCCCCAAGCTCCCTCTCATCGTTTACTTCCACGGCGGCGGTTTCATCCTCTTCAGTGCAGCCTCCGATTTCCTTCACGACCACTGCGTAAACCTCGCAAACGACGTCGGGTCCATCGTCGTATCCGTAGACTACCGTCTCGCCCCAGAACACCGGTTACCCGCGGCCTACGACGATGCCATGGAAGCGCTGCACTGGATCAGAACCCAATCANATGATTGGTTGAGAAACCACGCCGATTATTCCAACTGTTACCTCATGGGAAGTAGCGCCGGGGCAAACATCGCATACCACGCGGGTCTACGTGTGGCCGCGGGGGTTGACCAGGACTTTCTTAAGCCCCTTAAGATCAGAGGGCTGATACTGTCCCAGCCGTTTTTTGGTGGGACCAAGAGGATGCCCTCGGAGCTGAGGCTGGCGAACGATCCGGTTGTGCCGTCGCACGTGTGTGACCTGATGTGGGAACTGTCGTTGCCGGTTGGGGTTGACCGTGATCACGAGTATTGCAATCCAACGGCTGGAGATGGCCCTGTTGTTTTGGATCATGTGAGGCGCGTTGGGTGGCGGGTGCTGGTGACGGGGTGCGAGGGGGACCCACTGATGGACCATCAGATGGCGCTGGCGAGGCTGATGGAGGAGAAGGGTGTGGCGGTGGTGAGGCGTTTCGCAGGAGGGGNTTGTCATGGGGCTGAGGTTCGTGATCCCATCAGGCGAAACCAGTTGTATGACCGAATAAAAGATTTCATTGCTTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07288	480	1460	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007288s00045607.1	PF07859.8	Abhydrolase_3	82	304	2.00E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.631
SRR1783600	control	33.532
SRR1783602	moderate drought stress	53.321
SRR1811619	moderate drought stress	53.859

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.386
DRR006520	Root Summer glycyrrhizin high producing strain	16.575
DRR006521	Root Winter glycyrrhizin high producing strain	1.251
DRR006522	Root Winter glycyrrhizin high producing strain	1.115
DRR006523	Root Summer glycyrrhizin low producing strain	29.054
DRR006524	Root Summer glycyrrhizin low producing strain	29.957
DRR006525	Leaf Summer glycyrrhizin high producing strain	97.848
DRR006526	Leaf Summer glycyrrhizin high producing strain	99.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.587
SRR2868004	Drought Stress (root)	47.824
SRR2967015	Control (root)	46.907

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.783
SRR9715740	Leaf	23.644
SRR9715741	Leaf	27.451
SRR9715739	Root	45.231
SRR9715742	Root	25.745
SRR9715743	Root	23.851

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.290
SRR8749028	MeJA induced 9h	0.478
SRR8749029	MeJA induced 9h	0.414
SRR8749030	Uninduced	0.065
SRR8749031	Uninduced	0.078
SRR8749032	Uninduced	0.309

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.151
SRR8400027	Control - Root	14.850