Gene detail

Gene detail information of Glyur007276s00042727

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02130.1	1.00E-16	receptor-like protein kinase 2
NR	XP_007161602.1	1.91E-54	hypothetical protein PHAVU_001G083300g [Phaseolus vulgaris]
COG	YP_001192956.1	2.00E-11	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9S7I6\|RPK2_ARATH	2.00E-17	LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor)
trEMBL	tr\|V7CXH3\|V7CXH3_PHAVU	7.00E-55	Uncharacterized protein {ECO:0000313\|EMBL:ESW33596.1}

Sequence

Transcript Sequence

>Glyur007276s00042727.1
GACCACCGTCGAAGAGCCGATTTTCCATTTTCCAGCAACTCCCCGCCGGCAAGATTTGACCGGAACCATGTTTCAAACATGGGTCTTGTTTCTCTTTTTCCTCTATGGCTTCTCTTTCACCCTTTCGTTCTCTTCTTCACTACCCATCATCACACATAGGGCTGGGCACCGGTCGGTTTCGGTCGGTTTCGGGCCCAAAAATGTCAAACCGATTGAAACCGACATGCTTAAACCTGAGACCGTTCTCGTCCGTTTAAACCTCGGGGTTGGTCGGGTGACGGGAGATCTGGGAAGCGACACTGAATCCGTTGCAAACGTTGCTGCTCCCTTGGTGATCACACAGATTGCGACAGTGATGCAAGAAGCAGCCATTGGACGCGGTGGGGACGCAAGAAGAAGATGTTGCAGACGGTGGCGGAACGAGATGAAGCCGCTGGTGGTGGTTGTTTTTATGGCTGGGTTTAGTGTTTTAAGGCCTATGGTGGCGGGAAAATGGAGTGAGTATGGTGGTGGCGGTGAGCTTATACGAGAGAGGAAAAAAAAAAGTGAACCTGAACTTGAAGAAGTGAGCCCGAAGGCAAATCAGCCTATGTCTGCGACTGTGAAGACCAGTGATGTGAGAGTGAGAGATACTCCCTTCGGTCGGTTTCGGCCGCGCGTGTTATTTTTTTGGCCCGACAAACCGCTGCAACCCGTCCGCTTCTTTGCTACACTGTCGGGTAACTCGGGTTCCGGAGCCGCCACCGGGAGAATAACCGCTCTGCGAGTGACCGGTCTTCACGGCAGGGAGTTGGCGCCTTCCGTGGGAGACATGTCGGAGCTTCGCGTCCTGTCGGCACTTGAGGTCCTTGAGCTCCAAGGAAACAACTTTTTCGGCAGAGTCCCCTACCAGATGAGTTATCTAAAATCTCTTACCCTTGTTAACCTCTCTAGTAATGCTTTCTCTGGTTCCTTGCCGAGTGAGATTCCACCCCAAATTGGGAAATGCAAAAACTTGAGGACCCTTTTGGTTAATGGGAATATCTTGGAAGGTAGAATCCATCCTGAGATTGGGGATGTTGTTGAACTTAGGGTTCTAGATGTTTCTAGAAACAGCCTCACTGGAAGGGTCCCTAAAGAGTTGGCTAATTGTTTGAAATTGTATGTGCTTGTGCTTATTGATTTGTTCGAAGATCGCGGTCTCGACGATAACGAGGGAAGAAGCAGCTTGGAGGAGGGTAGCTTTGCGGTTGTGGTGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07276	1700	4094	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007276s00042727.1	PF00560.28	LRR_1	334	355	0.16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.957
SRR1783600	control	3.954
SRR1783602	moderate drought stress	13.592
SRR1811619	moderate drought stress	13.604

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.893
DRR006520	Root Summer glycyrrhizin high producing strain	4.128
DRR006521	Root Winter glycyrrhizin high producing strain	1.534
DRR006522	Root Winter glycyrrhizin high producing strain	1.300
DRR006523	Root Summer glycyrrhizin low producing strain	0.372
DRR006524	Root Summer glycyrrhizin low producing strain	0.195
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.913
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.288

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.526
SRR2868004	Drought Stress (root)	0.477
SRR2967015	Control (root)	1.334

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.041
SRR9715740	Leaf	0.079
SRR9715741	Leaf	0.048
SRR9715739	Root	0.100
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.792
SRR8749028	MeJA induced 9h	0.146
SRR8749029	MeJA induced 9h	0.175
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.366
SRR8400027	Control - Root	2.076