Gene detail

Gene detail information of Glyur007267s00046387

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19670.1	3.00E-76	chlorophyllase 1
NR	XP_004512891.1	5.58E-163	PREDICTED: chlorophyllase-1-like [Cicer arietinum]
COG	YP_003200998.1	9.00E-14	chlorophyllase [Nakamurella multipartita DSM 44233]
Swissprot	tr\|O22527\|CLH1_ARATH	6.00E-96	Chlorophyllase-1
trEMBL	tr\|G7KML3\|G7KML3_MEDTR	1.00E-158	Chlorophyllase enzyme {ECO:0000313\|EMBL:AES76626.1}

Sequence

Transcript Sequence

>Glyur007267s00046387.1
GCATGCATCTAGCTATCCAAATTAGATAAACGCTTAGGCTTTAAGTGCACTTCTTCACAAATTGCAAATAAGGCATTGGTGTGAGATATGGCGAAGATAGCTCAACCAGTAGTATTAGCCACCACCACCACCACTACTACAGATGTTTTCCAAAGTGGAGATTTTCAATGGAAGCAATTCAACGTTGACACAGATTCCCCAAAGCCTTTGTTAGTGTTTGCACCGACGGTGCCCGGCACATACACCGTAATATTGTTCTGCCATGGCTTCTGCGTTCGCAATAGCTTCTACTCTAGCCTCCTAGCCCACATAACTTCACATGGATTCATAGTTGTTGCTCCTCAATTGTTTGGCTTGGGCAATAACCTACCTTTGCCTGGACCATGTGAAGTGAAGTTTGCAGGCAAAGTTGTGGATTGGATAGCCGAGGGACTTCAAGCCCAACTCAACTCAATCGTTGGGGAGAACATCCAAGCCCAATTAGAGACCTTGGTCCTAGCAGGCCACAGCAAAGGTGGAAAAACAGCATTTGCAGTAGCATTGGGCCATGCCAAAACCAAACTCAACTATTCAGCCCTAATAGGTATAGACCCAGTTGAAGGCGCAAGTAAGTGCAAGATGTGTAGAACACTCCCTCATATTCTAACGGGCCAGCCTCAATCCTTCAATTTGGACATTCCCGTTGCGGTAATTGGAACTGGGCTAGGCCCAGAAATGAAAGGTTGCTGTTCCCCACCGTGTGCACCTGATGGGGTGAACCACATGGAATTTTTCTACGAGTGTAAACCTCCTTGTGCACATTTTGTGACAAAGGACTATGGTCACATGGACATGTTGGATGATGAGACACCTGGGGTGATGGGGAACTTGATGAAGTGTATGTGTAAGAATGGGAATGGTCCTAAGGACTTTATGAGAAGGACTATTGGAGGGTTGGTCGTTGCATTCTTGAGGGCTCAGTTGAATGACCAATGGAAAGATTTCAATGCCATTTTGGAGGATCCTAATCTTCCCCCTGCCAAGCTCGATGATCCTGTTGTGNATTTAGCTTCATGAAGCTTGAAAAAGAAATTTAAATGGTTAAATATGTTTTTAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07267	32	2234	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08099	E3.1.1.14	EC:3.1.1.14	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0015996 chlorophyll catabolic process

molecular_function
GO:0047746 chlorophyllase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007267s00046387.1	PF07224.6	Chlorophyllase	15	313	8.20E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.106
SRR1783600	control	0.097
SRR1783602	moderate drought stress	0.173
SRR1811619	moderate drought stress	0.173

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.098
DRR006520	Root Summer glycyrrhizin high producing strain	0.097
DRR006521	Root Winter glycyrrhizin high producing strain	6.825
DRR006522	Root Winter glycyrrhizin high producing strain	6.534
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.355

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.251
SRR2868004	Drought Stress (root)	0.153
SRR2967015	Control (root)	0.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.178
SRR9715740	Leaf	9.887
SRR9715741	Leaf	13.655
SRR9715739	Root	0.000
SRR9715742	Root	0.164
SRR9715743	Root	0.384

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.220
SRR8400027	Control - Root	0.055