Gene detail information of Glyur007254s00047304 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11925.1 | 9.00E-18 | Stigma-specific Stig1 family protein |
| NR | NP_001236011.1 | 7.68E-65 | uncharacterized protein LOC100500553 precursor [Glycine max] |
| COG | YP_008148814.1 | 5.00E-10 | hypothetical protein SCE1572_11855 [Sorangium cellulosum So0157-2] |
| trEMBL | tr|C6T234|C6T234_SOYBN | 3.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G11710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07254 | 621 | 1025 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007254s00047304.1 | PF04885.8 | Stig1 | 11 | 134 | 7.40E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.266 |
| SRR1783600 | control | 0.334 |
| SRR1783602 | moderate drought stress | 0.124 |
| SRR1811619 | moderate drought stress | 0.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.315 |
| SRR2868004 | Drought Stress (root) | 2.227 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.459 |
| SRR9715743 | Root | 0.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 348.060 |
| SRR8749028 | MeJA induced 9h | 32.478 |
| SRR8749029 | MeJA induced 9h | 69.243 |
| SRR8749030 | Uninduced | 561.020 |
| SRR8749031 | Uninduced | 909.719 |
| SRR8749032 | Uninduced | 1243.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.274 |
| SRR8400027 | Control - Root | 2.230 |