Gene detail

Gene detail information of Glyur007252s00041511

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06400.1	6.00E-88	chromatin-remodeling protein 11
NR	XP_010486148.1	1.36E-109	PREDICTED: putative chromatin-remodeling complex ATPase chain [Camelina sativa]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	7.00E-105	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|U5D662\|U5D662_AMBTC	3.00E-109	Uncharacterized protein {ECO:0000313\|EMBL:ERN16917.1}

Sequence

Transcript Sequence

>Glyur007252s00041511.1
TTTTTTTAAATATTTCTATTCTTTGCTTTTAGTTACTCATTTTTAAAGTGTCTTATTTTGGTCTCAATTTCTAGAAATATAATACTGTTAGTCACCCGTGTGCCATAGGAAGAGAGGGAAGAGAGAGGGGGAGAGAGGGAGGGGAAGAGTTGAAGTGGGAAAAAGGAGGGATAGGGGGAGAGGAAAAGGTGGCCAAGGAGGAGGGGGAGAGGAAATTTTTCTAGAAAAGAATGACCAAAATGAGACGTTTAAAAAATGAGAGATCAAAATTCTTTTAATTTTTTTCTTCTATTTCTGAAAACTCTTTCATTCCATGAAAACTTTTCATAAAGCTCTGTTTCATTCCATGAAGTTTTTCGATAAACTCTACTCCTTAAATTTTTTTACTCTAAATATGGAACGGGATGCCGACGATAGAGAACCGGATGCCGGTGATAGAGAAAGCATGCTTGAAGGCGCGACCACCTGTAAGAACAANGACTGTCACAAATGCAGAAACAGTATTATAGAGCACTACTAGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCTTGGATATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCCGGTCCTCCCTATAGAACAGGAGACCTTCTTATTACAAGCGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCTGAAATTAAAAGAGCGTGATTTGAGGGTCTTTATATTTTCACAGATGACTCGCCTTCTAGACATACTCGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATNGCGATGCCTCCATCGATGCTTTCAACACACCAGGAAGTGAGAAATTTGTATTCTTGTTATCAACTCGGGCTGGAGGTCTTGGTNTTAATCTTGCAACTGCTGATGTCGTCATTCTGTATGATAGTGACTGAAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCACATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTATGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTTTTATTCAGCAAGGGCAATTGGCTGAGCAGAAGATGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAAGAGGCAACTGCTGAGCTTGATGCCAAGATGAAAAAATTTACTGATAATGCAATCAAATTTAAGATGGACGACACTGCTGAGTTATATGATTTTGTTGATGTGAAGGATAAAGGATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGATTGAACCACCAAAAATAGAGCTGAAGCGCAACACAATTTTTTGTGAGTGAAAACTGGATTGAACCACCAAAAATGGAGCGGAAGCGCAACGCAATCTTAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTAGTAAACCAAAAGAGCCCCATACTCCTAGGATGCCTCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGACTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGTTGGAAGAAAAGGAACGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGAGATTTTAATACCTTCATCAGGGCCTGTGAAAAATATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAACGAATTAAATGATTATGATAGAGTTATAAAAAACATTGAGAGGGGAGAAGCTAGAATTTCTCGGAAGGATGACATCATGAAAGCCATTGGGAAGAAGTTGGATCGCTTCAAGAATCCTTGGCTTGAGTTGAAGATACAGTATGGGCAAAACAAAGGAAAGTTATACAACGAAGAATGTGACAGATTCATGATATGCTTTGTTCACAAACTTGGCTATGGGAACTGGAATGAGTTGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07252	282	4483	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006338 chromatin remodeling

GO:0043044 ATP-dependent chromatin remodeling

cellular_component

GO:0005634 nucleus

GO:0016589 NURF complex

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

GO:0016887 ATPase activity

GO:0031491 nucleosome binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007252s00041511.1	PF09111.5	SLIDE	110	184	2.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.442
SRR1783600	control	8.806
SRR1783602	moderate drought stress	23.690
SRR1811619	moderate drought stress	23.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.374
DRR006520	Root Summer glycyrrhizin high producing strain	6.714
DRR006521	Root Winter glycyrrhizin high producing strain	12.259
DRR006522	Root Winter glycyrrhizin high producing strain	10.812
DRR006523	Root Summer glycyrrhizin low producing strain	6.590
DRR006524	Root Summer glycyrrhizin low producing strain	6.354
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.741
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.995

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.047
SRR2868004	Drought Stress (root)	41.512
SRR2967015	Control (root)	35.699

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.444
SRR9715740	Leaf	10.100
SRR9715741	Leaf	20.088
SRR9715739	Root	0.928
SRR9715742	Root	5.572
SRR9715743	Root	4.786

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.512
SRR8749028	MeJA induced 9h	74.896
SRR8749029	MeJA induced 9h	11.362
SRR8749030	Uninduced	25.722
SRR8749031	Uninduced	20.909
SRR8749032	Uninduced	8.715

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.366
SRR8400027	Control - Root	51.381