Gene detail

Gene detail information of Glyur007223s00040845

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41740.2	2.00E-15	Disease resistance protein (TIR-NBS-LRR class) family
NR	KHN38342.1	0	TMV resistance protein N [Glycine soja]
Swissprot	tr\|Q9SZ67\|WRK19_ARATH	9.00E-10	Probable WRKY transcription factor 19
trEMBL	tr\|K7KBB2\|K7KBB2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G45353.1}

Sequence

Transcript Sequence

>Glyur007223s00040845.1
ATGTCTTTACCATCCCTCGAAGTCCTTGACCTTAATTTTTGCGTAAAGCTTGAACACTTCCCAGAGATAGTGAACAACACGAATAAGTCATTGAAGATTTGTATGATACAAACCGCTATTGAGGAGCTTCCAGATTCCATTGGTAAACTTACTGGGCTTGTTTCTATAGAGATGCAAAGTTGCAGGCAACGCAAATATCTACCAAGTAGCTTATTCAAGTTACCAAAAGTTGTTGCCTTGAAAATTGAAGGATGTTCTCAACTTAGAGAATCCTTCAGAACAGCCAATGGTCGTTCAATATTAAAAACATTGTATTTCGGAAATAGTGGTTTGCAAGATGAAGATCTTCAGGCAATTCTCATTTGTTTTCCAAAGTTAGAAGAGTTGATTGCATCAGAGAACAATTTCGTGTTTCTCCCTGTGTGCATTAAAAATTCTGTTCACCTGACAAATCTTGATGTGAGTGGTTGCCAGGAGCTTCAAGACATTCCTGAATGCACTAACTTGAGAATTCTAAACGTCCATCACTGCGTGAGGCTTGAACACATTTCAGAGTTTCCCTCTACTGTTCGGAAAGTAGATGCAAGATACTGCTTCTCCTTGCGTAGAGAGACGTCAGACATGTTATGGTATCAGGTGAAAAAAGATATACGTGAACTAGAAATTGTGATGCCCCAAAACGAGATTCCAGACTGGTATGACTACAGAGGTGAAGGAGGGAATCCCCGTTTCTGGGCTCGTGGGAAGTTCCCCAATGTTGCTTTAGCATTGGTGTTTGCGGGTGTGAATGGAAAGGCCAGACATTCCCGCCGACAACTTGTTGAGCTTCACTTGGTTATCAATGGTCAATGTGTCCCTCGCAAAGGCTATTACAACTTCAGAGTTGAAGCAGATCATGTCTTAGTTTGTGATCTACGACTCTTGTTCAGCAAAGAGGAGTGGCTGGGTCTTGAAGCATTTCTCGTGCATGAGTGGAATCTAGTGCAGGTTTCATATGAAGCCCCATCTGCCATGACGCTCAGTTGTTGGGGAGTATTTGTGTACAAACAAGGAACAACCAACATGGGAGAATATGTCCAATTCATGTGTCCCGACCCAAAATGCTCAGATATAGCCAACATACCCACAATAGTCCCTGCAAGAGATCCTAAGTGGGAACAAAGGAAGATGATAGAGGAGTTAGCTCTAGATAAAATGTTTGATGGGACGTTGAGGGAATCCATGGACTTCGAAGAACGAGATTACTTTGCAGACTTTGATGATAAAGATTTTGCCCAAGAGCAACACTATGTTCTAATGAGAAGTTTGAAGAAGATATCGGAGGAGGCTCAGGATCTCTTCAAATTTCTTGCGCAGAGCTTTGTGTTCCTCCATCAACTTGCAGTAGAGTTTACTCTTGGCCTCCTCTCACAACTTTCTTGCTTCATCATCATAAATGCTTCCAACAAAGGATCATCCTCAGTGCTAGGTACCTTCACTTTAGTCCAATCCAATTCCAATAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07223	134	4045	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007223s00040845.1	PF00560.28	LRR_1	5	22	0.92
Glyur007223s00040845.1	PF00560.28	LRR_1	148	169	0.16
Glyur007223s00040845.2	PF00931.17	NB-ARC	56	132	3.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.136
SRR1783600	control	3.149
SRR1783602	moderate drought stress	2.447
SRR1811619	moderate drought stress	2.358

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.403
DRR006520	Root Summer glycyrrhizin high producing strain	2.172
DRR006521	Root Winter glycyrrhizin high producing strain	1.444
DRR006522	Root Winter glycyrrhizin high producing strain	1.450
DRR006523	Root Summer glycyrrhizin low producing strain	0.301
DRR006524	Root Summer glycyrrhizin low producing strain	0.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.755
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.829

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.504
SRR2868004	Drought Stress (root)	1.069
SRR2967015	Control (root)	0.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.823
SRR9715740	Leaf	2.226
SRR9715741	Leaf	1.763
SRR9715739	Root	0.914
SRR9715742	Root	7.219
SRR9715743	Root	6.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.329
SRR8749028	MeJA induced 9h	3.783
SRR8749029	MeJA induced 9h	3.952
SRR8749030	Uninduced	3.468
SRR8749031	Uninduced	0.856
SRR8749032	Uninduced	0.555

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.254
SRR8400027	Control - Root	13.771