Gene detail

Gene detail information of Glyur007164s00047115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37040.1	0	PHE ammonia lyase 1
NR	ACF94716.1	0	phenylalanine ammonia lyase [Robinia pseudoacacia]
COG	YP_007039255.1	3.00E-72	Histidine ammonia-lyase [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|P27990\|PALY_MEDSA	0	Phenylalanine ammonia-lyase
trEMBL	tr\|B6S390\|B6S390_ROBPS	0	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}

Sequence

Transcript Sequence

>Glyur007164s00047115.1
ATGCTTCTCACACCCAGGTTTTTGAACGCTGGAATATTTGGCAACGGGACAGAGTCATGCCACACNCTGCCACACTCAGCAACAAGAGCTGCCATGCTAGTGAGAATCAACACACTTCTCCAAGGCTACTCAGGCATCAGATTTGAGATCCTAGAAGCCATCACCAAGCTCCTCAACACCANCATCACCCCATGCTTACCCCTCCGTGGCACAATCACTGCCTCTGGAGATTTGGTCCCTCTTTCTTACATTGCTGGTTTGCTCACTGGCAGACCAAACTCCAAAGCTGTGGGACCCTCTGGAGAGCTTCTCAATGCCAAAGAAGCTTTCCAATTGGCTGGCATCAACAATGCTGAGTTCTTTGAATTGCAACCCAAAGAAGGCCTTGCCCTTGTTAATGGCACTGCTGTTGGCTCTGGCTTAGCTTCCATTGTTCTCTTTGAGGCTAACATATTGGCTGTNNTATCCGAAGTCTTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTCACTGACCATTTGACACACAAGTTGAAGCACCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTNTGGATGGAAGTTCCTATGTCAAAGAAGCNAAGAAGTTGCATGAGATGGANCCTTTGCAGAAGCCAAAACAAGACAGGTANGCACTTAGGACCTCACCACAATGGCTTGGTCCTCTGATTGAGGTGATTCGGTTCTCCACCAAGTCAATTGAGAGAGAGATCAACTCTGTCAANGACAACCCTTTGATTGATGTCTCAAGAAACAAGGCCTTGCATGGTGGGAACTTCCAGGGAACCCCTATTGGGGTATCCATGGACAACACACGTTTGGCTCTTGCATCAATTGGGAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTGTACAACAATGGGTTGCCTTCAAATCTCTCTGCAAGTAGGAACCCCAGCTTGGATTATGGTTTCAAGGGTGCCGAGATTGCCATGGCTTCTTATTGTTCTGAACTCCAATACCTTGCAAATCCAGTCACAACCCATGTCCAGAGTGCNGAGCANCACAACCAGGATGTGAACTCTTTGGGTTTGATTTCCTCTAGGAAAACCAACGAATCCATTGAGATCCTTAAGCTCATGTCTTCCACTTTCTTGGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAGCTCTGTCAAGAACACTGTGAGCCAAGTTGCCAAGAGGACCCTTACCANAGGGNTCAGTGGAGAACTCCACCCTTCAAGATTCTGTGAGAAGGATTTGCTNAAAGTNGTTGATAGGGAGCATGTGTTTGCCTATATTGATGACCCATGCAGTGCCACATACCCACTGATGCAAAAGCTTAGGCAAGTGCTTGTGGATCATGCATTGGTGAATGGAGAGAGTGAGAAGAACCTGAACACCTCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACNCTCTTGCCAAAGGAGGTGGAAAGTGCAAGGGCTGCATATGAGAGTGGCAATTTGGCAATTCCAAACAAGATCAAGGAATGCAGATCTTACCCACTTTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGTTTGCTAACTGGAGAGAAGGTCATTTCCCCAGGTGAGGAGTGTGACAAACTGTTCACTGCAATGTGTCAGGGCAAAATCATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07164	2003	4272	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10775	PAL	EC:4.3.1.24	Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006559 L-phenylalanine catabolic process

GO:0009058 biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0016841 ammonia-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007164s00047115.1	PF00221.14	Lyase_aromatic	6	421	8.20E-146

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.771
SRR1783600	control	4.666
SRR1783602	moderate drought stress	6.765
SRR1811619	moderate drought stress	6.916

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.278
DRR006520	Root Summer glycyrrhizin high producing strain	5.384
DRR006521	Root Winter glycyrrhizin high producing strain	0.194
DRR006522	Root Winter glycyrrhizin high producing strain	0.123
DRR006523	Root Summer glycyrrhizin low producing strain	9.023
DRR006524	Root Summer glycyrrhizin low producing strain	10.047
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.091

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.117
SRR2868004	Drought Stress (root)	188.316
SRR2967015	Control (root)	104.837

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	105.426
SRR9715740	Leaf	44.881
SRR9715741	Leaf	170.637
SRR9715739	Root	12.560
SRR9715742	Root	35.257
SRR9715743	Root	30.392

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.462
SRR8749028	MeJA induced 9h	9.871
SRR8749029	MeJA induced 9h	2.838
SRR8749030	Uninduced	155.504
SRR8749031	Uninduced	54.948
SRR8749032	Uninduced	35.885

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.512
SRR8400027	Control - Root	28.970