Gene detail information of Glyur007159s00044249 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63470.1 | 3.00E-24 | AT hook motif DNA-binding family protein |
| NR | XP_003611096.1 | 1.21E-64 | DNA-binding PD1-like protein [Medicago truncatula] |
| trEMBL | tr|G7KC38|G7KC38_MEDTR | 5.00E-65 | AT hook motif DNA-binding family protein {ECO:0000313|EMBL:AES94054.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07159 | 1999 | 2552 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007159s00044249.1 | PF03479.10 | DUF296 | 1 | 62 | 2.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.478 |
| SRR1783600 | control | 7.809 |
| SRR1783602 | moderate drought stress | 7.107 |
| SRR1811619 | moderate drought stress | 7.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.271 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.512 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.127 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.806 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.791 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.030 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.165 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.478 |
| SRR2868004 | Drought Stress (root) | 9.447 |
| SRR2967015 | Control (root) | 9.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.885 |
| SRR9715740 | Leaf | 2.005 |
| SRR9715741 | Leaf | 5.334 |
| SRR9715739 | Root | 6.276 |
| SRR9715742 | Root | 7.327 |
| SRR9715743 | Root | 7.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.899 |
| SRR8749028 | MeJA induced 9h | 1.916 |
| SRR8749029 | MeJA induced 9h | 0.896 |
| SRR8749030 | Uninduced | 0.710 |
| SRR8749031 | Uninduced | 0.250 |
| SRR8749032 | Uninduced | 2.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.171 |
| SRR8400027 | Control - Root | 8.880 |