Gene detail information of Glyur007147s00043242 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29250.1 | 2.00E-51 | Alba DNA/RNA-binding protein |
| NR | XP_004486682.1 | 7.12E-85 | PREDICTED: uncharacterized protein At2g34160-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|O22969|Y2416_ARATH | 1.00E-66 | Uncharacterized protein At2g34160 |
| trEMBL | tr|G7IUU4|G7IUU4_MEDTR | 5.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:AFK35428.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07147 | 755 | 2981 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007147s00043242.1 | PF01918.16 | Alba | 20 | 82 | 4.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.713 |
| SRR1783600 | control | 44.584 |
| SRR1783602 | moderate drought stress | 36.217 |
| SRR1811619 | moderate drought stress | 35.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 90.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 94.412 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 98.654 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 95.378 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 82.594 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 79.558 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.739 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 173.949 |
| SRR2868004 | Drought Stress (root) | 138.145 |
| SRR2967015 | Control (root) | 116.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 84.497 |
| SRR9715740 | Leaf | 94.136 |
| SRR9715741 | Leaf | 86.681 |
| SRR9715739 | Root | 28.608 |
| SRR9715742 | Root | 41.084 |
| SRR9715743 | Root | 39.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 339.759 |
| SRR8749028 | MeJA induced 9h | 116.453 |
| SRR8749029 | MeJA induced 9h | 247.826 |
| SRR8749030 | Uninduced | 114.332 |
| SRR8749031 | Uninduced | 116.284 |
| SRR8749032 | Uninduced | 140.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 172.119 |
| SRR8400027 | Control - Root | 169.991 |