Gene detail information of Glyur007123s00046226 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16740.2 | 5.00E-40 | terpene synthase 03 |
| NR | XP_003628407.1 | 4.80E-113 | Limonene synthase [Medicago truncatula] |
| Swissprot | tr|Q93X23|MYRS_QUEIL | 1.00E-81 | Myrcene synthase, chloroplastic (Precursor) |
| trEMBL | tr|G7LB17|G7LB17_MEDTR | 6.00E-109 | Monoterpene synthase {ECO:0000313|EMBL:AET02882.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07123 | 6 | 1061 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007123s00046226.1 | PF01397.16 | Terpene_synth | 68 | 241 | 2.30E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 82.335 |
| SRR1783600 | control | 80.277 |
| SRR1783602 | moderate drought stress | 81.945 |
| SRR1811619 | moderate drought stress | 84.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.942 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.262 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.109 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.224 |
| SRR2868004 | Drought Stress (root) | 8.746 |
| SRR2967015 | Control (root) | 6.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.434 |
| SRR9715740 | Leaf | 3.398 |
| SRR9715741 | Leaf | 0.117 |
| SRR9715739 | Root | 10.490 |
| SRR9715742 | Root | 72.002 |
| SRR9715743 | Root | 61.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.152 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 123.417 |
| SRR8400027 | Control - Root | 32.879 |